NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1000049

Scaffold Ga0272434_1000049


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1000049 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)251823
Total Scaffold Genes301 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)158 (52.49%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006206Metagenome378Y
F021216Metagenome219Y
F021452Metagenome218Y
F079402Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_1000049262F079402N/AMRNKLKINKNHFSIEELKIAYMKSQVNETMIKHIALQMRNAITNSFLEAEEMLLIINKMYNDLN
Ga0272434_1000049264F021216N/AMFQMKSIMKSNVRKREHYKLKKAFRNHKRNNDNYSNDTLNEHIESILSCDVIKKSNERNK
Ga0272434_1000049276F006206N/AVKIISLCNLDEILSKENYFNKSFLVNALLILQNESFSLRSLIDSDSAVYMIIYINLVDKVCKELRIQPILLTKEKLIKEYDEKIFKKTITHKILSNLIIESHKKLTVSMLIVDIDHHEVILEKS
Ga0272434_1000049280F021452GAGMLISCFINMLDDSFDFKSFIVNIILSSLKKIFQFLVLINIKVIDIMFINDSLISELCKCFDIQSISLFKSKLIHSYDKTLNQRFITYALYISITIQEHKNEMISLLITHLNQHKIIIDNL
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