NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1000078

Scaffold Ga0272434_1000078


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1000078 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)215605
Total Scaffold Genes212 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)109 (51.42%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006206Metagenome378Y
F021896Metagenome216Y
F044226Metagenome154Y
F055318Metagenome138Y
F061401Metagenome131Y
F081945Metagenome113Y
F089603Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_10000781F044226GAGMMKFSDNFNIFSIISMISFYFNKEFHPRMSFDSDTTDYETTREQLEARKADDIVI
Ga0272434_100007824F006206GAGLCKLDEILLKENYFEKSFLIDAHLISQNQSFSLRSLIDSDSVIYMIIHANLINRVCKKLEIQSISLTKEKLIRDYDEKIFKKIITHKILLNLIIESHKKLTVSMLIADINHHEVILNKL
Ga0272434_100007825F061401N/ALNNDQRVIREIKNKIKRVDDLSKTIFHKATIITSSVDHLKSDQLKSRDAILTSVKEADILVEICFIYHKSDHSFKECLDQPTRINAVNDEYDCFDFNFDFDSKN
Ga0272434_100007826F081945N/AMFSLSSTKECFEEFQNRFSQISDADSSKSSSAASFIHEDDESFAKMIILLMFYEI
Ga0272434_10000783F021896N/AVTKNNLESEDFLKNVKCNLTFLKSDKEYIFSDETSERDSYSTIVIDESFIEVREI
Ga0272434_100007836F089603AGAAGMINTHYRELERIIKKVKSIVMYIDASQIRKKIAEFETEIETTVIFTHELVRCSKATSVSGKIIITKAKLQAISDAITMCSEKALKNSEI
Ga0272434_100007844F055318GAGLNDIEALHDDEALCIDCMQSFRDHADFDNLNVHVTKSNSHADEKVK
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