 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031473 Open in IMG/M |
| Scaffold ID | Ga0272434_1000146 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 171509 |
| Total Scaffold Genes | 227 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 65 (28.63%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (37.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.5 | Long. (o) | 159.59 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F002432 | Metagenome | 559 | Y |
| F004755 | Metagenome | 424 | Y |
| F009377 | Metagenome | 318 | Y |
| F033266 | Metagenome | 177 | Y |
| F055319 | Metagenome | 138 | Y |
| F065269 | Metagenome | 127 | Y |
| F086377 | Metagenome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272434_1000146116 | F009377 | AGAAG | MNVSLNTEEKNMNVLLFNHEMIKISISTELNAXISTHEADDIIVFIKYICQQHNIEIEIHNDMIQMLEDVNEINIMLKITQTRLQKENRNKNVIIHHLEVASSXQSTLTSEDXFLKLIKLLNSSLFEDSLQNVNNXLFXIXNKLKTNKNHFSIEELKIAYIESXVSEAAIKHIAL |
| Ga0272434_1000146170 | F086377 | N/A | MIQRFXDQRQRILILDCDSVQISIVHAEAKFFFKFLDEKNRDDHLKVTDLNEIFAQILIQIMMKF |
| Ga0272434_1000146174 | F055319 | AGCAG | MIEVRMRRLRLVDKMICIQISERNLAQKLDFFRRQXDFFIYTNDITVINIHDMQSEELFI |
| Ga0272434_1000146175 | F001951 | N/A | MIKLRFIDSSRNEKERNKDTVKTTVTEMIIFELKELLINAKMLLILMNEMMMKMK |
| Ga0272434_1000146188 | F004755 | GAG | LFNDSNKEVNFYKEYYNLIQEFKKFNEFYTQFQRLSFYLNYYEKQLIVDLKDKIYSRLXFIXINQLVQSDFLKEIRFYLIHLNNDQRVIQKIKNKIKHVDDLSKTIFHKVIIVTQSVDHSKSDQLKSRDAVLTNVKEANILVESCFIYHKSDHSFK |
| Ga0272434_1000146189 | F033266 | N/A | MSSHSFTEEHFKEFRNRFSQISDADSLKSRTKSSSAASFIHEDDASFIEMMILFVFYEIXKTQSLVLNEETNQLYKLNKQQEDEIKELKTKL |
| Ga0272434_1000146203 | F065269 | N/A | MTRSSKSASIAYYELQNVRRKSLLSQNQTASEEEDTNALLNIEEKNMNVLLFDHEMIKISISTKLNA |
| Ga0272434_1000146227 | F002432 | N/A | SKIDNQTKRVNQDVERELRIYCNYMQNDXVKXISMMKFSDNFNIFSVISMISFYFNKKFHPRMSFDSDTTDYETTCEXLEARKADNIIIXMKELLSFNHQQLKKTKLIIEVQINKHRRNIIYEVDDXVXLSFKNVKTMRLCKDLKDKQLELYQITVKARVFYHLHLSVSMKHLHLMFSSKLLRLYSEDSLSEQHAESLRLIIINDDNDEHXKIDDILNFRRYRDRIQYKIKXKDLDRDNEXYYVDKDEFNDFEKVLNEFHVLYSRKLR |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |