NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1000150

Scaffold Ga0272434_1000150


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1000150 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)168797
Total Scaffold Genes107 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (21.50%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007459Metagenome350Y
F015552Metagenome253Y
F020636Metagenome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100015043F020636N/AMFRQNFKNNLKNKIMRNKRTFNDMFNLIEIVINFNDKLYKRAIKKKYD
Ga0272434_100015046F007459N/AMYLSCSTMNFSLHAIICEYLISLLIIISIELYLSSIARFVDFDNLIIKFIVTLFYNNLNN
Ga0272434_100015054F015552N/AMTQLTFNAKILNIIKITLFFVNYNKKLNFFEKKRTHLFAQLAIKRVATLKKIHDNILKMQKRLTKY
Ga0272434_100015061F015552N/AMTQLTLNAKILNITKITSFFANYNKKSNLFKKERTHLFAQLVIKRVVILKKIHNNILKIQEKLIKY
Ga0272434_100015062F007459N/AMYSSCFAMNFSLYAIIYKYLISLLIIINIKLYLSSIVKFVDFDNLIIKFIVTLFYNDLNN
Ga0272434_100015088F007459N/AMYLNCFAINFFLHAIIYKYLINLLIIISIKSYLFSIIKFVNFNNLIIKFIVTLFYNDLNN
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Biomedical Sciences Research Center "Alexander Fleming"
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