Scaffold Ga0272434

Basic Information
Taxon OID	3300031473 Open in IMG/M
Scaffold ID	Ga0272434_1000169 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031473 Open in IMG/M

Scaffold ID

Ga0272434_1000169 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	159665
Total Scaffold Genes	168 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (18.45%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

159665

Total Scaffold Genes

168 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (18.45%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (22.22%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.5	Long. (^o)	159.59	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.5

Long. (^o)

159.59

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F004755	Metagenome	424	Y
F008115	Metagenome	338	Y
F011463	Metagenome	290	Y
F042102	Metagenome	158	Y
F055317	Metagenome	138	Y
F068292	Metagenome	124	Y
F086375	Metagenome	110	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100016911	F055317	N/A	MKVXKKCIYALNRETDRLVKMKQQDKSEIQQLKAKLQAFTAITVNVIITAFSVVIYFERSRYHKILDSLMFTDEKNSTXKNXSLDIREKLAINVDIFSNELYKLSYINFQLADNVVKITQVRCNSNCDNFYLTVNELLKKLAQSFHDSDKKDNYRRKYINLIQESKKFSDFFNQFQRLYIYLKYQKNVLVVNLKNKINSRLXIFXTAQMKSLIKLSNIQNYLICLNNEHKAVQEIKNKLLKHNDSKIIISRATIAVQSSTLKSDXSKSRSAVLTNVKNVDVLVEICFVCHKSDHSFKECL
Ga0272434_1000169129	F001253	N/A	LSQXDHHVKRREEIIYREIEEXDKKLVTFIKDAMKNVLISSTMSSSNDFFALKSLITECVLSSNEISYSLKSLIDIEAADYSFIDKLIAQNVCDHLQIESLSLIKLKSIREFNDHYAKKLITHAIYLNLTVQDHTIDTAFMLITXLD
Ga0272434_1000169130	F068292	GAG	VKQRQADXSMLRQDTQSAEQXVNQKVERSSTFEAHSQRESSTLSENENDYYKFIKLLNSLIFIETDDSIXETXNIKIVDKLDVNANHYSTKKICIVYVIFRLEDDADQQIYAKHHVDAFSFYQSLSELLKHLKEIYEDQNLIQKYHHEYITLKQLNKLFSSFYLEFTRIFSFLNYNDITLMNNIQNKINNHLQNVLSVCLIKFSSLNKLKIFLQDVNNKQXVNYQLRDE
Ga0272434_100016914	F008115	N/A	MLXNVYRLHDLFSSIVSNRDSQFISTMXKSLCKXLRITASLFTVYHFEIDDQSKRVNQDVECKLKIYCNYMQNDXVKXISMMKFSNNFNIFLITSMTFFYFNKEFHFRISFNSDTTDYKTTCEXLEVRKTDDIVIXMKELLSFDHQQLKKTKLIIKVQINKHRXDVTYEVNDXVXLSFRNVKTTRLCKDLKDKQLNLYQITAKVSIFYHLHLLVSMKHLHSMFSSKLLXLYSKDFLSEQHSKSLRSITIKDDEHXKINDILNFRCYXDXIQYKVKXKDLDKDNEXYYVDKEKFDDSEKVLNEFHKLYSSKSR
Ga0272434_1000169158	F086375	N/A	MFTLFVNSKSIVSXNLDENXFNEIKEHYKRQNNNCVVIFKXLHKLRQFNIXKKVNEIDKAVMKDNVRDEIKQEQKNKDIHDNASQ
Ga0272434_100016927	F042102	N/A	MTRSSESASIARYELQNARRESLLSQNRTVSEEEDTNASSNTEKENTNALLFDHEMIKISINTELNAXISTHEADDIVVFIKYMCQQHDIEIEIYNDMIQMLEDVNEINITLKITQTRLQKENRNKSVIIHHLEAASSRKSTSISEDQFLKSIKLLNSSLFEDSMQNVDNXLFQMRNKLKTNKNHFSIEELKIAYIESRVSEAATKHIASRMQDIFLNSFLEVEEVLSIINKMYDDLNHHHTTQRQYLKLYQNKIFFHEFXMKFQRFSAELEYNNKILLDDLQHKISSDLQRATLNERITNLNELIDICMRVDVRLTELNARSVVKASATQAARSVSNTSTARLTSSVSSXKKLRRSNLDSIQKELFKKELCFKCKKSEHKAYDCLEMTQVHEIAANSKNDLLSSK
Ga0272434_100016946	F011463	N/A	MKELLNFNHQQLKKTKLTIKVQINKHKXDVTYEVNDXVXLSFRNVKTTKLCKDLKDKQLNLYQITAKVNIFYHLHLSVSMKHLHSMFSLKLLXLYSEDLLSEQHSESLRSIIIKDDEHXKIDDILNFRCYXDRIQYKVKXKDLDKDDEXYYVDKEKFDDSEKVLNEFHKLYSSKSR
Ga0272434_100016953	F001253	N/A	VTFIKDVMKDVLISSTMSSSNNLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIREFDDHYAKKLITHAIYSNLTVQDHMKRFAFMLITRLNQHQIILEKT
Ga0272434_100016967	F004755	GAG	LSYVHSRLFNDAAEIIQARCERDCVNLYRIVEDLLKELAQLFNDLNKKVNFRKEYYNLIQESKKFSEFYTQFQQLSFYLDYHEKQLIVDLKDKINPRLXFVXIDQLVQSDFLKEICFYLIYLNNDQRVIXEIKNKVNLIKCINNLSKIIFHKAVVTQSVDHSKSDHLKSRDAILTNVKKADVVVEICFICHKSDHSFRECLDRSTRINAVNDEYDCFDFDSNFDSKN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272434_1000169

Overview

Ecosystem & Geography

Associated Families

Sequences