NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1000201

Scaffold Ga0272434_1000201


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1000201 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)149238
Total Scaffold Genes172 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)105 (61.05%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048019Metagenome148Y
F058565Metagenome134Y
F102179Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_1000201152F058565AGAAGMNCINCSSADSKTIASDVDSLQENRDARLKHSRDDEKNVANIIDLLIKISTLEKEKSKDH
Ga0272434_1000201160F058565AGAAGMTMNCMNCSNADSKTIASNVDLLQENRDVRLKCSCNNEENVANIIDLLIKISMLEKEKSKDHS
Ga0272434_1000201168F102179AGAAGMSVYNVSENMNMCSAMHVRSMLLRVMTLAMQETHLDEVHLLRNKISQLKLTISKSINIEMLIYKNYNITEKQLNSIVETVDCKQLISHAIVKVLIIHEMTYDFNSKFVVKLIKILQQEDEFAVRLKANKTMNI
Ga0272434_1000201170F048019N/AMNEHTFELFFAQVFMKALQDKFTVYAFIIINVVEELIIEHQVKAMNNVMIHIINALKMQVLLVELKKYKDVFLTKNADKLFLHENHDHAIKIIAESLYELLYNLLNIKLMILKQYLNDILVKE
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