Scaffold Ga0272434

Basic Information
Taxon OID	3300031473 Open in IMG/M
Scaffold ID	Ga0272434_1000220 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031473 Open in IMG/M

Scaffold ID

Ga0272434_1000220 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	143730
Total Scaffold Genes	144 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	73 (50.69%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

143730

Total Scaffold Genes

144 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

73 (50.69%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.5	Long. (^o)	159.59	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.5

Long. (^o)

159.59

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F006206	Metagenome	378	Y
F037508	Metagenome	167	Y
F048019	Metagenome	148	Y
F102179	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_1000220108	F102179	N/A	MSVHNVNENMNTCSAMHVRSMLLKIMLLTMQEMHLDEVHFLRNKISQFESITLKSINIETSTYRNQNVVKKQLNSVVETVDCKQLISHVIVKVLTKLITLNQVLKFNLSTQLEKC
Ga0272434_1000220117	F006206	N/A	VKIISLCNLDEILSKENYFDKSFLVDAFLISQNESFSLRSLIDSDSAVYTIIHINLVDRVCKELRIQSISLTKEKLIKKYDEKIFKKTITHKILLNLIIESHKKLTVSMLIADINHHEVILEKS
Ga0272434_1000220122	F001253	GAG	VTFIKDVMKDVLISSTISSSNDFFASKSLTTECVLSSNEISYSLKSLIDIEVADYSFINELITQNVCDHLQIESLSLIKLKSIRKFNDHYAKKLITYAIYLNLTVQDHIKRFVFMLITRLDQHQMILEKT
Ga0272434_1000220123	F037508	AGAAG	VIFRLEDDADQQIYAKHHVDAFSFYQSLSELLKHLKEIYEDQNLIQKCHCKYITLKQLNKFFSSFYSEFTRIFSFLNYDDVILTNDIQNKINNHLQNVLSVCLIKFNSLDKLKIFLQDVNNKQ
Ga0272434_1000220126	F048019	N/A	VNEHAFELFFAQVFAKALQDEFTVYAFFMINVVKKSIIEHQVKVMNNVMSCITNAFKTQILLVELKEYEDIFLIKSANKLSLHEDHDHAIKITAKSSYELLYNLLNIELMTLRQYLNDVLAKE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272434_1000220

Overview

Ecosystem & Geography

Associated Families

Sequences