Scaffold Ga0272434

Basic Information
Taxon OID	3300031473 Open in IMG/M
Scaffold ID	Ga0272434_1000306 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031473 Open in IMG/M

Scaffold ID

Ga0272434_1000306 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	124648
Total Scaffold Genes	144 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	68 (47.22%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

124648

Total Scaffold Genes

144 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

68 (47.22%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (22.22%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.5	Long. (^o)	159.59	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.5

Long. (^o)

159.59

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F006206	Metagenome	378	Y
F021896	Metagenome	216	Y
F055318	Metagenome	138	Y
F055319	Metagenome	138	Y
F081945	Metagenome	113	Y
F087980	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100030615	F021896	N/A	MMKNNLKNENFLKNVECNLTFLKSDKEYIFSDEMNERNSYFTIVINESFIKVREI
Ga0272434_100030619	F055318	N/A	MLHDDEMLCIDHVQSFRDRANFNNLNVHVINNLHADEKVK
Ga0272434_100030622	F055319	AGCAG	MIEVRVKRLKLVNKIIYIQIFKHDLAQKLNFSCKQRDFFIYTDDVIVVNVHNMQSEEFFIRVFFNNFA
Ga0272434_100030623	F001951	N/A	MIITKFKFIDSLKDEKERNKNTVKTTVTEMMIFKLKKLLVNAKMLLTLTNKTMMKMK
Ga0272434_100030627	F087980	N/A	MIKNSVEIFCIMQKLQNQVQQHDVIISSLFIILSSSVYIELNSQSLAMITQIVTQILNNQSSFIIYFFVNFVAVIIAFRFKKLLDISEYEKNKDQLNA
Ga0272434_100030629	F001951	GAG	MIMTKLRFIDLLKDEKERDEDTVETTVTEMMIFESQKLLVNAKMFLTLMNETMMKMKQD
Ga0272434_10003063	F006206	N/A	LCKLDEILSKENYFEKSFLIDAHLISQNQFFSLRSLINSDSVAHTLIHANLVNRVCKNLEIQFISLTKEKLIKDYDEKIFKKIITHKILFNLIIESYKKLTVSMLIADIDHHEVILSKL
Ga0272434_100030638	F021896	N/A	MKNNLESKDFLKNVECNLTFLKSDKEYIFSDETSKRDSYSTIIINESFIKVCKI
Ga0272434_10003064	F081945	N/A	MFSRSSTEERFKEFQNYFSQISDADSSKFSSAESFISEDDESFAETVILSVSIEN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272434_1000306

Overview

Ecosystem & Geography

Associated Families

Sequences