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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031473 Open in IMG/M |
| Scaffold ID | Ga0272434_1000314 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 123113 |
| Total Scaffold Genes | 143 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (25.17%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (12.50%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.5 | Long. (o) | 159.59 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F002432 | Metagenome | 559 | Y |
| F028978 | Metagenome | 189 | Y |
| F041516 | Metagenome | 159 | Y |
| F055318 | Metagenome | 138 | Y |
| F075493 | Metagenome | 118 | Y |
| F096306 | Metagenome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272434_100031418 | F075493 | N/A | MQSVXAMHEYMLRRLIISFAVTSQAIHVXNVSKVQISIQIYAFNSDVHCKNAFCFLKIITHLYHLIAQMQSLCXDCVDICDAFSVLFSSLISLIFVILRYCNAIACXNHCEEENVSSASQLYLRIFLNEDIQKYYFLDNEXARNNAINFRQMSAY |
| Ga0272434_100031429 | F001951 | N/A | MIMMKLRFIDSLRNEKERDEDTVEMTVTEVMIFEFKKLLVDAEMLLTLINEIMMKTKQN |
| Ga0272434_100031439 | F075493 | N/A | MQSVQAVHEYMLCHLMTLFAITLQVIYVXNVSRVQISIQIYAFNSDMHCKSAFCFLKIITHFYCLIAQMQSLCXDYVDICNAFSVLFSSLISLIFVILHYCDAIACXNHCEEENVSSASQLYLRIFLNEDIQKYYFLDDEXARNDAINFHQTSVY |
| Ga0272434_10003144 | F096306 | GAG | MYDNHAVDNLIIDDDSNKERSCKDNSEIQASMILLNIAILIATNVKIVFVESNDK |
| Ga0272434_100031444 | F055318 | N/A | MLRDDEALCIDRVQSFRDHADFNNLNAHATKSNLHADEKVK |
| Ga0272434_100031476 | F028978 | N/A | LNQIKIADLKKKENDESIYQLILKANKINKNCILLHKVVLKDEAQYKDIKLRNYQVQNKILY |
| Ga0272434_100031491 | F002432 | N/A | MXKSLCKRLRITANLFTVYHSKINNQMKQVNQDVECKLRIYCNYMQNDXVKXISMMKFSDNFNIFLIISMTSFYFNKDFHSXMSFNSDTTDYEITHEXLKARKADDIIIQMKKLLSFDHQQLKKTKLIIKAQINKHKXDVIYEVENXVXLFFKNVKITRSCKDLKDKQLELYQIIVKAKIFYHLYLSVSIKHLYLMFNLKLLQLYSEDLLSEQHAKLLRLIIINEDDDEHXKINDILNFRCYQDQIQYKIKXKDLNRNNEXYYVNKDEFNDFKKVLNKFYMLYSRKSR |
| Ga0272434_100031493 | F041516 | N/A | MLKTLINDAQMTQRVIHIHEAYNSSLRDHKIIHEKENLSNIEKTLYILKENILVENFNLHHFTXEE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |