Scaffold Ga0272434

Basic Information
Taxon OID	3300031473 Open in IMG/M
Scaffold ID	Ga0272434_1000330 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031473 Open in IMG/M

Scaffold ID

Ga0272434_1000330 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	121563
Total Scaffold Genes	117 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (16.24%)
Novel Protein Genes	15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (13.33%)
Associated Families	14

Scaffold Components

Scaffold Length (bps)

121563

Total Scaffold Genes

117 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (16.24%)

Novel Protein Genes

15 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (13.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.5	Long. (^o)	159.59	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.5

Long. (^o)

159.59

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F005901	Metagenome	386	Y
F006206	Metagenome	378	Y
F008115	Metagenome	338	Y
F017767	Metagenome	238	Y
F020121	Metagenome	225	Y
F021026	Metagenome	220	Y
F028368	Metagenome	191	Y
F055317	Metagenome	138	Y
F061400	Metagenome	131	Y
F070711	Metagenome	122	Y
F074202	Metagenome	119	Y
F080688	Metagenome	114	Y
F094625	Metagenome	105	Y
F096306	Metagenome	104	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_1000330102	F096306	N/A	LCDIRAMFAMYDNYAVDSLIIDDDFNKERSCKDNSELHVSMILFNIVILIATNVKIVFVESNDK
Ga0272434_1000330114	F080688	N/A	MIRVEMHXTTHSDVHQSLDFEDLHEKQTVESMTSQLSEHSIKVQLSDHL
Ga0272434_1000330116	F028368	AGAAG	LCKLDEILLKENYFEKSFLINTHFISQNXSFSLCSLIDSDSVIYMIIHSNLVNKVCKKLKIQFISLTKEKLIRDYDEKISKKIITHKILLNLIIESHKKLTVSMLIADINHHEVILSKLXMNKNEILLNMQNNVIVFSNQLNTFISIFLISLNSKHSSXSXSTLSSSITQTKIFTMLKQLVSITAQKESFLIQSINTALFKTLLNHSKKNKIKVFALFMMNINRKIAYNTQCDLNALNISSINETIQNLKDIKAKLSLKYHEFLDVFDRA
Ga0272434_100033013	F094625	N/A	MIENSVKIFRVMQELQNQVQQHNVIILFSFIILNSSIYIKLNSQFLVMIVQIIAQILNNQSFFIIYFFANSVAVFITFRFKKLLDIFKYEKNKDRLNVXKQSLIQRINMNDDHYFSHQVKIAYVELXFIINKKTHNLMN
Ga0272434_100033016	F021026	N/A	MNKFFAQQHYLFLHQLIHSCKLQEFNDQVALINDITHIVEITMILNEHIKRLFFYVIELSQYLIIMSLSXLHHHVIDVNFKHNILILFFFFCFNHCCSSCVKIYDFNQQEENFLFEVNKVAFFQSHSQFIQRKQFSSXITYKK
Ga0272434_100033026	F020121	N/A	MLIAQIIYEFNVNLFHRSCFKYFIEDEVXLNACNFNIIHLAVKLNDCNVDFFKIKCVFKNNSLIIELNLSAFMKIHSIFHVILLSHIASDFLSNQYQKSXKLIIIKNDERFXYVNSILNFKYDKCYNSSLLKYYIN
Ga0272434_100033033	F074202	N/A	MKTVDCKMNCKMNCKMNCKTIYISFLLMFSCLLCSDNAFNLALFLDDDFFLKLVISKLRLHVTAELDFKEEVILRCSFFNAKDDDLDSSFNLKIATNFIKFLXFIIFHNDXSFFFNLFLSVKCDVTRSKXADAESRAFESEVVVDLAVINLAVVNLAVLNNVDNENSLKFENLDCENDMKRSTSIVSSFFSSDIVN
Ga0272434_100033044	F080688	N/A	MIQAEMHXTTHSDVHQSSDFENLYEKQTVKSMTSQLSEHSIKVQLLDHF
Ga0272434_100033046	F005901	N/A	LNSFVFIDEDKSTXDSXRIKIDDKLQTNINHFVNETICIVYVISRLEDDAAEHIFAXHDHDASHSYISIYKLLKHLKEIYKDQNKNRKCHHKYNTLRQADKLFNVFYFNFMKLFSYLEYNDHILMNDLQNKINNRLQNALSICLKDFITLHHLKSFFQSMNNRQXVNYQLRSERCTIIVKIIIASEKRATSLSAVMTSIIEYVKLIIFSTSESIKSSIVCYICKISDHLFKNCSQNKINTSASHVFILYLHEIIISKNKENEKMTFFFKNNETKN
Ga0272434_100033047	F017767	N/A	MKDVLIFSTTSMSDDSFASESLTIEYILSSNEINYSLKSLIDIEAADYSFINEVIA
Ga0272434_100033062	F055317	N/A	LQXTRSQAFSSIVDSQHASSFIAFDESNAEIIILDDIEVXKKRIYDLNKETDHLVKIKQXDKSEIQQLKAKLQAFTAITVNVIITALLIVIYFKRSKYHKILNSSMFTDEKNSTXKNXSLDIXEKLAMNVDIFSNELYKLSYINSQLADDVVEVTQVRRNLNCDNFYLTINELLKKLAQSFHDSDKKDNYRRKYINLIQESKKFSDFFNQFQRLYIYLKYQKNVLVIDLKNKINSRLXIFXTAQMKSLIKLSDIRNYLIRLNNKHKAVREIKNKLLKRDDSKIIISKATITVQSFALKSDXSKSRSAVLTSVKNADVLVETCFVCHKSGHSFRECLNQSIKVNAVDENYDRFELDTESEFKSKN
Ga0272434_100033063	F006206	N/A	VKIIFLCNLDEILSKENYFDKSFLVNALLILQNESFSLRSLIDSDSAVYTIIHINLVDKVCKELRIQPISLTKEKLIKEYDGKIFKKTITHKILLNLIIESHKKLTVSILIADINHHEVILEKSXMNKNEILLNMRINVIVFSN
Ga0272434_100033066	F008115	N/A	MXKSLCKRLRITASLFIVYHSKINNQTKRVNQDVECELRIYCNYMQNDXVKXISMMKFSDNFNIFLIISMISFYFNKDFHSQMSFDSDTTDYEITRERLKARKADDIVIQMKELLSFDHQQLKKTKLIIEAQINKHRRDVIYEINDXVXLFFRNVKITRSCKDLKDKQLELYQITVKARIFYHLRLSVSMKHLHSMFSSKLLQSYSEDFLSEQHAESLRLIIIDDDDNKH
Ga0272434_100033077	F061400	GAG	MTSESVKQIMLLKYYNHIMNLNSEKTIIKAXDIYCKEEDEDNAINEAADSFRADLQNVLCFIIV
Ga0272434_10003308	F070711	N/A	VLISSTISMSDDSFTSESLTTECVLSSNEISYSLKSLIDIKAADYSFIDEVIAQIVYD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272434_1000330

Overview

Ecosystem & Geography

Associated Families

Sequences