NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1000376

Scaffold Ga0272434_1000376


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1000376 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)113394
Total Scaffold Genes145 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)76 (52.41%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F003820Metagenome466Y
F013598Metagenome269Y
F017941Metagenome237Y
F021452Metagenome218Y
F036036Metagenome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100037610F000597N/AMSDNSFASESLTIECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVYDQLQIEFLTLIKAKSIQEFNDYYAKKLITYVIYLNLTVQSHTIEIASILITQLN
Ga0272434_100037611F003820N/AMKLFSYLDYDDCTLMNDLQNKINNRLQNALSICLKDFITLHHLKSFLQSVNNRQRVNYQLQSKRCMIIVKVIIASEKRVTSLSAVMISIIEYVKSIIFSTSESVRSSIVCYICKISDHLFKNCFQNKINISASCVFTFRLHEIIISKNKENEKMTFFFENSEAKN
Ga0272434_100037614F021452N/AMSDNSFDFKSFTVDVVLSNLEKIFRFLILIDIKVIDITFINESLMSELCECFDIQSISLSKSKLIQSYDEIFKRKLITHTLYTLIMIQEHKNEMMLLLITHLNQHKIIIENL
Ga0272434_10003765F036036N/AMLISLIHHLLSCFDQSFASEDQCFIHVIKYIFDSINLQAFTSAFILDDVRIKAHMRMKVLVHEEENQEDD
Ga0272434_10003766F013598N/AMNFIINLSDSFNYNAILTVICRLLKERHYISCIIDDEEITVERTIKMLIQ
Ga0272434_10003767F017941N/AMKIADLKKNISESIYKQVLDVNEINENCTLLREAKIKDEAQCKNIKLKNC
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