NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1000400

Scaffold Ga0272434_1000400


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1000400 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)110635
Total Scaffold Genes65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (33.85%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007459Metagenome350Y
F015552Metagenome253Y
F020636Metagenome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100040012F020636N/AMFRRNLKNNLKNEIIRDKKRINDMFDFIKVAINFDDKLYKKAMKKKYD
Ga0272434_100040014F007459N/AMYFSCFAMNFSLHAIIYKYLISLLIITSIELYLSLVARFVDFDNLIIKFIVTSFHSDLSN
Ga0272434_100040059F015552N/AMTQLTLNAKISNIIKITLFFVNYNKKLNLFREERTHLSTQLVIERVATLKKIYDNILKM
Ga0272434_10004009F020636N/AMFRRDFKNNLKNEIMRDKKTLNDMFNFIEIVIDFDDKLYKRAMKKRYN
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