NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1000408

Scaffold Ga0272434_1000408


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1000408 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)109168
Total Scaffold Genes126 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)75 (59.52%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F013598Metagenome269Y
F017941Metagenome237Y
F036036Metagenome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100040810F017941N/AMKIADLKKNVSESIYKQVLDVNEINKNCTLLREAKIRSEAQCKDIKLKNC
Ga0272434_100040814F000597N/AMLNDSFASESLTIECILSSNEISYSLKSLIDIKAADYSFIDEVIAQIVYDQLQIESLTLIKAKSIREFNDHYAKKLITHVIYLNLTV
Ga0272434_10004088F036036N/AMLISLIHHLLLCFDQSFASEDQCFIHVIEYILDLIDLQAFASAFILNDVRVETHMRMKVFVHEEENQEDD
Ga0272434_10004089F013598N/AMNFIINLSDSFNYNAILPVICKLSKERHYISCITDDEEITVKRTAKMLIQ
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