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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031473 Open in IMG/M |
| Scaffold ID | Ga0272434_1000429 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 107399 |
| Total Scaffold Genes | 131 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (25.19%) |
| Novel Protein Genes | 11 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (9.09%) |
| Associated Families | 11 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.5 | Long. (o) | 159.59 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002432 | Metagenome | 559 | Y |
| F009377 | Metagenome | 318 | Y |
| F017767 | Metagenome | 238 | Y |
| F061400 | Metagenome | 131 | Y |
| F064252 | Metagenome | 128 | Y |
| F066295 | Metagenome | 126 | Y |
| F079402 | Metagenome | 115 | Y |
| F081945 | Metagenome | 113 | Y |
| F086377 | Metagenome | 110 | Y |
| F087979 | Metagenome | 109 | Y |
| F098340 | Metagenome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272434_1000429111 | F002432 | N/A | MKFSDNFNIFLITSMILFYFNKEFHSXMSFNSDTTDYKTTCERLKARKANNIVIQIKELLNFNHQQLKKMKLIIEIQINKHRXNVIYEVNDXIXLSFRNVKTTRLCKDLKDKQLDFYQITVKVSIFYHLCLSVSMKHLHLMFSSKLLQSYSEDSLSEQHSESLRLITVKDDEHXEINDILNFRCYQGXIQYKVKXTNLDRNNKXYYVNKEKFNDLKKVLNEFHKLYSNKSR |
| Ga0272434_1000429115 | F066295 | AGAAG | LKTRLQAKENTSSDFIYSERSRSQKIPDSLLFTDEKNSTXKNXYGKIQNKLEINVNLFSNERVKLSYIHSRLFDDAAEITQTRRERDCVNLYRIVDDLLKELAQLFNDSNKKVNLHRKYYNLIQRFKKFNEFYTQFQRLSFYLNYHEK |
| Ga0272434_1000429116 | F081945 | N/A | MFSHSFTEERFEEFRNHFSQIFDADSLKSRMKSSSAASFIHEDDESFTETMIFSVFYEI |
| Ga0272434_1000429119 | F098340 | N/A | MIEFAAYQTLIKKKNVKIFTLIISKINKMLSLIKDSAKLNEMIFVMSLKKLKKKLSIIYHDFLNVFDREKITQLFLHQSYDHKIELKDEN |
| Ga0272434_1000429121 | F087979 | N/A | MKEKNESSTFIYMNXAKLRLDSSFIDLRLQKFMHMIKMIKTKLLKLD |
| Ga0272434_100042920 | F064252 | N/A | VNQSXSRQSTKSQASIKNCTXRESFTLFNNDHHKFFKFLNSFIFTDEDESTXDSXRIKINDKFQTNVDHFDNENICIVYVISRLEDDVAEHIFAQHXHDALHSYILIYELFEHLKEIYDKLNKNRKCCHEYNILRQADKSFNIFYFNFMKLFSYLEYNDCTLMNDLQNKINNRLQNALSVCSKNFTSLTHLRIFLQDVNSKQRVNYQLRSERCTVIIKVTVVPDKCATSLSVTTLIIDYVKLTIFSISESVRSSIICYICKILNHLFKNCFQLNKIDTSTSHAFTSCLHEIIISKNKENEKMSCENSEAKN |
| Ga0272434_100042921 | F017767 | N/A | MKDVLISSTISMSDDSFDSESLTTECVLSSNEISYALKLLIDIKAADYSFIDEVIT |
| Ga0272434_100042947 | F086377 | N/A | MIQRFXNQRQRISIFNDDNIQISIVHAEAKFFFEFLDEENKDDRLKMTDLNEFFAQILI |
| Ga0272434_100042955 | F061400 | N/A | MLLKYYNHIINLNSEKTIIEAXNIYRREEDEDNAIDESDDSFKTDLQNFLHFINV |
| Ga0272434_100042976 | F009377 | N/A | MTRSKESESVSIARYELQNARRESLLSHNXVASEEEDINAMSNIEEKNMNALFFDYEMIKISINEELNAXIIDKRTDNIIIFIKYMIHQHDIEIETHNDMIQMLKDVNKINIKLKTIQTTLNTIRTRLQKKMRNKNVIIHHLETASSQQSTLISKDXFSKSIKLSDSSLFEDSKQNMNNXLFQMRNKLKMNKNHFSIEELKIAYVKSXVNETMIKHIAFRMRNAIMNSFLEAEEMLLIINKMYDNFNQRHTTQRQFLKLYQNKIFFHDF |
| Ga0272434_100042999 | F079402 | N/A | MQNKLKMNKNHFSIKEMKIAYVKSXVSETMIKHIALKMRNMITNSFLEAEEILSIINKMYDDFN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |