NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1000434

Scaffold Ga0272434_1000434


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1000434 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)106580
Total Scaffold Genes118 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)60 (50.85%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006206Metagenome378Y
F037509Metagenome167Y
F044226Metagenome154Y
F058565Metagenome134Y
F081945Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100043411F081945N/AMFSHSFTEKCFEEFRNRFSQTSDADSLKSRMKSSSAASFIHEDDESFTETIISLVFYEI
Ga0272434_100043419F044226N/AVKFSNNFNIFLIISMISFYFNKDFHFRMSFDSDTTDYEITCERLKARKANDIVI
Ga0272434_10004342F058565N/AMNCMNCSSADSKTIASDVYSLQENRDVRSKHSRDDEENVANIIDLLIKISTLKKEKSKDH
Ga0272434_100043425F006206N/ALKENYFKKSFLINVSFIFQSNSFSLRSLIDSDFVIYTLIHDKLVNKIYQKLEIQSILLAKEKLIQDYDEKLAKKTITHKILLNLTIKSHKKLTMSMLITDIEHHEAILSKL
Ga0272434_100043427F037509N/AMILISLFIQVHLTDNKMSIKKFVYLMIDDIERQNNIKKSIESMRIYDHVIAKESIAQSVASVQID
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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