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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031473 Open in IMG/M |
| Scaffold ID | Ga0272434_1000557 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 93378 |
| Total Scaffold Genes | 90 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (22.22%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.5 | Long. (o) | 159.59 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001253 | Metagenome | 736 | Y |
| F005901 | Metagenome | 386 | Y |
| F008735 | Metagenome | 328 | Y |
| F009580 | Metagenome | 315 | Y |
| F017767 | Metagenome | 238 | Y |
| F028667 | Metagenome | 190 | Y |
| F036035 | Metagenome | 170 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272434_100055720 | F036035 | N/A | MKDRMKDDAMQREHHELEKASRNHERDDSNHSNNTFNKHTESISDCDVIKELDEKERK |
| Ga0272434_100055729 | F008735 | N/A | MKEIMIIVHVHALYQTLLSCIQSIFVLLILRYVKKLLKSRSNDDSDRICKEMNDERRLIVQDLCNDLSYHCKKLRIQLYINXRTENDEQEXSDDIMLLNLILKLLHCAKSFDXIFNHTLSELFNSTLIVDQEIIRXLYLSERIIKQDFNVXKCCRKCKSFIMSKTRLN |
| Ga0272434_100055731 | F009580 | AGTAG | MICIQISERNLAQRLNFSCEQRNFFIYIDDITVVDVYDMQSEELLIXAFFSDFAXMLQLAIVTQLSLVANFLDFRNDQNLILNDDNDEA |
| Ga0272434_10005578 | F028667 | GAG | MLIELRDQRDMTLKLNKQXINVQVNHIKRLDELEINQMTIDTQEETIIELREKVLSLKKRQRSANQSRSHQSTESRASTKSLPRQSIENHTRRDSFTLFNNDHHKSFKFSNSSVFIDEDESIXNSXRIKMNDKLQTNVDHFNNENICIVYVISRLEDDAAEHIFAXRRHDALHSYISINELFEHLKEIYDELNRNXKCRHEYNALRQTDKSFNVFYFDFMKLFSYLDYDDCTLMNNLQNKINNRLQNALSICSKNFTSLTRLRIFLQDVNNKQRVNYQLRSQLRTVIVKVTVISDKCAATSLSAVTTSIIEYIKLTIFSISESVRSSIVCYICKISDHLFKNCSQNKINISTSCAFILRLHEIIISKNKENEKMSSFEDSEAKN |
| Ga0272434_100055780 | F005901 | N/A | VISRLEDDAAEHIFAXHRHDALHSYILINELFEHLKEIYDELNRNXKCRCKYNTLRQAEKSFNVFYFNFMKLFNYFEYDDCILMNDLQNKINNRLQNTLSVCSENFTSLTRLRIFLQDVNNKQXVNYQLRSQLRTVIIKVTVISDKCIATSLSMTTSIIDYVKSILSSTSESARSSIICYTCKISSHLFKNCSQNKINTFASCAFIFCLHEIIISKNKKNEKMSSFKDSEAKN |
| Ga0272434_100055781 | F017767 | N/A | MKEMLISSMMSMSDDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFID |
| Ga0272434_100055789 | F001253 | GAG | VTFIKDAMKDVLISSTTSSSNDLFVLKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDKLIAQNVCDHLQIESLSLIKLKSIRKFDDHYAKKLITHTIYLNLTV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |