NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1000562

Scaffold Ga0272434_1000562


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1000562 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)92725
Total Scaffold Genes99 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (33.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Lecanoromycetidae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007459Metagenome350Y
F015552Metagenome253Y
F020636Metagenome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100056216F015552N/AMTQLILNAKVLNTTKITLFFANYNKKLNIFKKERTHLFAQLIIKRVATLKKIHDNILRMQERLIKY
Ga0272434_100056217F007459N/AMYFSCFAMNFFLHAIICKYLISLLIIISIKLYLSLIVKFVDFDNLVIKFIVTLSYNNSNN
Ga0272434_100056219F020636N/AMFRRDLKNNLKNEIIRDEKILSDMFDLIKVVINFDDKLYKKAIKKYN
Ga0272434_100056282F020636N/AMFRQDFKNNLKNEIMRDKKTLNNMFDLIEVIIDFNDKLYKKAIKKYDQF
Ga0272434_100056285F015552N/AMIQLTLNAKILDIIKITSFFVNYSKKLNLFREKRTHLLAQLVIKKIATLKKIHDNILKMQKRSIKY
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Institute for Fundamental Biomedical Research
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