NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1000620

Scaffold Ga0272434_1000620


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1000620 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)87476
Total Scaffold Genes112 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)68 (60.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006206Metagenome378Y
F037509Metagenome167Y
F044226Metagenome154Y
F059497Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100062029F044226N/AMIKFSENFNIFSIISMTSFYFNKSFHLRMSFDSNTTDYKIIHEGLEARKVNDIII
Ga0272434_100062032F059497GAGMFIKDIDRKIIYNTQCKLDVINVFFTDETTQNLENIKVKLSLKYQNFLNVFDQVQADKLLSHQSYDHKIELTSDATSSHCQAY
Ga0272434_100062033F006206GAGLCSQIKVLSKENYFEKSFLINASFISQSNSFSLRSLINSDFVVYTLIHDKLINKVCQKLEIQFILLVKEKLIRDYDEKLVRKTITHKILLNLTIESHKKLTMSMLIADIEHHEAILSKF
Ga0272434_100062038F037509N/AMILIFILIQIHSTDNKTSIKKFVYLMINNIERQNNIKKSIKSMRTYDHVIAEEFITQSVASVQID
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