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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031473 Open in IMG/M |
| Scaffold ID | Ga0272434_1000657 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 84736 |
| Total Scaffold Genes | 106 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (20.75%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.5 | Long. (o) | 159.59 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008169 | Metagenome | 337 | Y |
| F008668 | Metagenome | 329 | Y |
| F008735 | Metagenome | 328 | Y |
| F020121 | Metagenome | 225 | Y |
| F021026 | Metagenome | 220 | Y |
| F023763 | Metagenome | 208 | Y |
| F048017 | Metagenome | 148 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272434_100065727 | F021026 | N/A | MIVFCILYQAQSKVSALALIDSDISAYVFMNKSFTQQHRLFLHLLIHSCRLQEFDDQVTLINDITHVIEFTIILDEHVEKLFFYVIELNQYFIIMSFSXLYHHFVYINFEHNTLILFSLFCLSHCCQFFVKIYDFNRSEENVLLEAKEVASTQFARKKQFSLQFAFKE |
| Ga0272434_100065731 | F023763 | GAG | MSFQNCLMLILMLRIKCIFLLRKIFXTTCQSIQFIIDLVEIICDAIVEFKQKLASTSLMTTQLLNXHEILKIFVIYDHLDRTDKVFKLXALFFECANNDYEFFIVDLIVTLDXIMLLEKVSDXMKNFILIILKENVFKHIVQSIDFYHNLVIXIVVM |
| Ga0272434_100065736 | F020121 | N/A | MKKLTEHLHDEMLITQIIYKFNVNLFRCSYFKYFVEDEVXLNACNLNIVHLAIKLNDHNVDLFKIKHVFKNNSLIIELNLSAFMKIHSIFYVILLNHIASDLFSSQCQKSQELVIIKNDERFXYVNSILNFKHDKCYNLSLLKYYIDXKDHFFTXKFFHLLNNCE |
| Ga0272434_100065748 | F008735 | N/A | MREIAIIVYIHALYQTLLSDIQLIFVLLILKYVEKLFEFNESRDSNRICKEMNDERKLIVQDLCNNLRYYHKRLRIQLYINXRTENDEQKXSDNIMLLNLILKLLHYAKDLNXIFNHTLSELFNSMLIINQEIVKXLYLNERILKXDFNIXKCCRKCRSFIMSKTRLN |
| Ga0272434_100065767 | F008668 | N/A | MKFSDNFNIFLITSMILFYFNKEFHSRMSFDSDTTDYETTCERLKARKADDIVIXMKELLSFDHQQLKKTKLIIEVQINKHKXNVIYEVNDXV |
| Ga0272434_100065768 | F048017 | N/A | MFIDHQTLKIFMKNKQLSXXQVNYLNILSKFNFQIIFRSGKMNTKVNALIRMSLTNVSELAQRLKDYFQTILIFDKVDVLSVESKANLYQXVHMINQTDELCSEYKQVMNENKLKFHITKLKDCEIIDDVLFRKDLLXVLENMHTKLLQKIHDQLSIFHLNNR |
| Ga0272434_100065771 | F008169 | AGG | MILDRETDQLNKLSNQXDDEIKELKTRLQTKEITSSDFIYSERSRSQKIPDSFXFTDEKNFTXENXYDKIQNKLEINVNLFSNERVKLSYVHFRLFDDTADVAQSRCKRDYVNLYKIVDNLLKKLAELFNDSNKKVNFHKEYYNLIQESKKFNKFYTQFQXLSFYLKYYEKQLIIDLKDKINSHLXFIXINQLVQSDSLKEIHFYLIHLNNDQXVIXKIKNKVNLIKHIDDLLKIIFHKAVVTQSVDHSKSDHLKLCDAILTSIKEADVLVETCFICHKLDHSSRECSDXSTRINAVNNEYDCFKFNFDSNFDSKN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |