NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272434_1000673

Scaffold Ga0272434_1000673


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1000673 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)84005
Total Scaffold Genes97 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)55 (56.70%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006206Metagenome378Y
F008668Metagenome329Y
F044226Metagenome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100067388F044226GAGMIEFSENFNIFSIISMTSFYFNKSFHSRMSFDSDTTDYETTRERLEARKANNIII
Ga0272434_100067392F006206GAGLCKLDEILSEENYFEKSFLIDVFLNSQNRSFSLRSLIDSDSVAHTLIHANLVNRVCEKLEIQSISLTKEKLIRDYDEKISKKIITHKILFNLIIESHKKLTVSMLIADIDHHEVILSKL
Ga0272434_100067397F008668GAGMMKFSDNFNIFSIISMTSFYFNKEFYPRMSFDSDTTDYETTRERLEARKADDIVIRMKELLSFDRQQLKKTKLIIEVQINKHRRNVIYEVDD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.