NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1000836

Scaffold Ga0272434_1000836


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1000836 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)72657
Total Scaffold Genes103 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (49.51%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006206Metagenome378Y
F008668Metagenome329Y
F102180Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_1000836102F102180GAGLKESTLVITHHEELKELIVKMKHLADVVTVNRECREKIYKIYSDSQIFLKTVKIMTSTKDQKRL
Ga0272434_100083686F008668N/AMISFYFNKDFHSRMSFDSDTTDYEITRKRLKARKADDIIIQMKELLSFNHQQLKKTKLIIEAQINKHRRDVIYEIDD
Ga0272434_100083691F006206GAGLCKLDEILSEENYFEKSFLIDAHLISQNQFFSLCSLIDSDSVAHTLIHTNLVNRVCKKLEIQSISLTKEKLIRDYDEKIFKKIITYKILFNLIIESHKKLTVSMLITDINHHEVILSKL
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