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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031473 Open in IMG/M |
| Scaffold ID | Ga0272434_1000875 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 71204 |
| Total Scaffold Genes | 74 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (12.16%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (11.11%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.5 | Long. (o) | 159.59 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F001951 | Metagenome | 612 | Y |
| F003820 | Metagenome | 466 | Y |
| F008115 | Metagenome | 338 | Y |
| F011463 | Metagenome | 290 | Y |
| F021452 | Metagenome | 218 | Y |
| F044227 | Metagenome | 154 | Y |
| F055317 | Metagenome | 138 | Y |
| F080688 | Metagenome | 114 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272434_10008751 | F008115 | N/A | MNFITELFLSEDYNVICTIICCLIKEHHYVFCHXKDDDISVEETIXIMLXNVYQLHDLFSSIVSNRDFQFISTMXKSLCKRLRITASLFTVYHSEINDQSKRVNQNVKRELRIYCNYMQNDXVKXISMMKFSDNFNIFSITLMTFFYFNKEFHLRMSFDSDTTDYETTRERLEARKADDIVIQMKELLSFDHQQLKKMKLIIEVQINKHRRNVTYEVDNXVXLSFRNVKTTRLCKDLKDKQLNLYQITAKIDIFYHLCLSVSMKHLHLIFSSKLLRSYSEDSLSEQHSESLRSIIIEDDEHXKIDDILNFRRYQGRIQYKVKXKDLDRDDEXYYVDKEKFNDSEKVLNEFHKLYSSKPR |
| Ga0272434_100087514 | F001951 | GAG | MMIMTKFKFIDSSKDEKRRDEDTVETIVIKMMILKLKELLINAKMFLTLMNKMMTKMK |
| Ga0272434_100087520 | F021452 | N/A | VTESNIFIFCFISMSDNSFDFKSFTVDVILSNLEKIFRFFALINIEVTDMTFIDESLMSELCERFNIQSILLSKSKLIQSYDEISDQKLITHALYTLIMIQEYKNEMMFLLITCLNQHKIIFENLXLKRNQILIDSANDXLISSLKI |
| Ga0272434_100087541 | F000597 | N/A | MISMSDDSFTSESLIIECVLSSNEISYSLKSLINIEAADYSFIDEVIAQIVCDQLQIKSLTLIKAKSIREFNDHYAKKLIIHVICLNLTVQDHMIDTAFMLITXLNQH |
| Ga0272434_10008755 | F044227 | N/A | MMQLQIKSSNDEACTHALFELIAFAIKNATRCXLLELLNNHHHHEEFQSSSEDDDKNKAFEAI |
| Ga0272434_100087559 | F055317 | N/A | MTFKNTSDKDKAFVDFLQQTRSQALSSIVDSQYAFSFIAFNESNAEIIILNDMKVXKKRIYALNKETDRLVEMKKQDKSEIQQLKAKLQAFTAITVNVIITAFLIIIYFERFKYHKILDSSMFIDEKNSTXKNXSLNIXKKLAININIFSKKLYKLSYINSRLADDIIEITQVRRDLNCDNLYLTINELLEKLAQSFHDSDKKDNYHREYINLIQESKKFSDFFNQFQRLYIYLKYQKNVLVINLKNKINSRLXIFXTAQIISLIKLSDIRNYLIRLNNEYKAVQEIKNKLLKHDDSKIIIFKAIIAVQSSALKSDXSKSRNAVLTNVKNADVLVEICFIYHKSDHSFKEYLNQSIKVNAVDENYDRFELNTESEFKSKN |
| Ga0272434_100087566 | F003820 | N/A | MNNFQNKINNCLQNALSVCSENFTSLTRLRIFLQDVNNKQRVNYQLRSQLCTVIIKVTVVSDKHAVTSLSAVMTSIIEYIKSTIFSTSESVKSSIICYICKISDHLFKNCFQNKIDTSTSCAFTSHLHEIIISKNEKNEKMSSFKDSEAKN |
| Ga0272434_100087568 | F080688 | N/A | MFXTLMTXAEMHXTTHSDVHXSSDFENLYEKQTVESMTSQLSEHSIEVQLSNHL |
| Ga0272434_100087571 | F011463 | N/A | VXLSFKNVKTTRLCKDLKDKQLDFYQITVKVSIFYHLYLSVSMKHLHSMFSLKLLQSHSEDSLSEQHSESLRLIIIKDDEHXKINDILNFRCYQDXIQYKVKXKDLDKDDEXYYVNKEKFNDSEKVLNKFHKLYSSKSR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |