NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1000888

Scaffold Ga0272434_1000888


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1000888 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)70730
Total Scaffold Genes84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (52.38%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F001951Metagenome612Y
F021896Metagenome216Y
F055318Metagenome138Y
F055319Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100088871F001253N/AMKDVLISSTISSSNDFFASKSLTTECVLSSNEINYSLKSLIDIEAADYSFIDELIAQNVCDHLRIEFLSLIKLKSIKEFNDHYAKKLITHAIYSNLTVQDHMKRFIFMLITQLNQHQMILEKT
Ga0272434_100088876F021896N/AVTKNNLESEDFLKNVECNLTFLKSDKEYIFFDETSERSSYFTIVIDKSSIKVREI
Ga0272434_100088880F055319AGCAGMIEVRVRRLRLIDKMICIQISKRDLAQRLNFSCRQRDFFIYTDDVTVVDIHDMQSEKLLI
Ga0272434_100088881F001951N/AMMIMMKFKFIDSLRNKRERDKDTVRMTITEMMIFELKKLLVDAEILLTLMNKMMTKMK
Ga0272434_100088884F055318GAGLNDIETLRDDEALCVDRMQSFRDRADFDNLNAHATSNLHADKKVK
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