NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1000910

Scaffold Ga0272434_1000910


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1000910 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)69701
Total Scaffold Genes72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (15.28%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F035571Metagenome171Y
F037509Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100091011F037509N/AMILISLLIQVNLTDNKMSIKKFVYLMINDIERQNNIKKSIESTRTYNHMIARESIAQSVASVQIN
Ga0272434_100091016F002432N/AMIEFSKNFNIFSIISITSFYFNKSFHSRMSFDSDTTDYKTTHECLKARKADDIIIXMKELLSFDHQQLEKTKQIIKAQINKHKXDVIYEVDDXVXLFSRNIKTTRSCKNLKDKQLKLYQITVKVEIFYHLRLSISMKQLHSMFSLKLLCSYFNDFLSEQHSKSSKSLTIEDDEHXKIDDILNSRRYRDRIQYKIKXTELDQDDEXYYVDREEFKSLKEVLVEFHKLYSDKSH
Ga0272434_100091059F035571N/AMYVSVFKVSMFTLLNASATXCKVXFXSISSLHSLLNSSSFLSRXCQTDASNAISDFTTAEYTCFAFVKIAFHVKISKXLSVSILVMXFVSIYQRCTSHCSFMFSYISKTCTSDFNLITELSIYMLIIMLNLFDFLVKCMSSYFFDANVALXVQAHFTQTLYALLSVLQISLVNLL
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