Scaffold Ga0272434

Basic Information
Taxon OID	3300031473 Open in IMG/M
Scaffold ID	Ga0272434_1000916 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031473 Open in IMG/M

Scaffold ID

Ga0272434_1000916 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	69330
Total Scaffold Genes	78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	42 (53.85%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

69330

Total Scaffold Genes

78 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

42 (53.85%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (12.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.5	Long. (^o)	159.59	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.5

Long. (^o)

159.59

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F003820	Metagenome	466	Y
F006206	Metagenome	378	Y
F008668	Metagenome	329	Y
F013598	Metagenome	269	Y
F017767	Metagenome	238	Y
F017941	Metagenome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100091655	F006206	N/A	LKENYFEKSFLINASFISQSNSFSLRSLINSDFIIYMLIHDKLVNKVCQKLEIQFILLAKEKLIREYDEKLARKTIIHKILLNLMIESHKKLTVLMLIVDIKHHEAILIKL
Ga0272434_100091660	F017767	N/A	MKEMLVFSMMSMSDDSFASESLTIEYVLSNNEISYSLKLLIDIKAADYLFIDEVITQIVCDKSVVKLKLS
Ga0272434_100091666	F013598	N/A	MNFIINLFDSSEYNVILTIICRLSKKRHYISCITDDENITVKKTAEMLIQ
Ga0272434_100091667	F017941	N/A	MKIADLKENISESIYKQILETNEIDENCTLLREAIAKDKTQYENIKLKNC
Ga0272434_100091672	F000597	N/A	MKDVLISSTMSISDNSFASESLTIECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKLIREFNNYYAKKFITHVIYLNLTVQDYTIDTASMLIT
Ga0272434_100091673	F003820	N/A	MKLFSYLEYNDCILMNDLQNKINNRLQNALSICSENFTLLTRLRIFLQDVNSKQRVNYQLRSKRCTIIIKVTVIFDKCATSLSVTTLIINYDKLTIFSTFKSARSSIICYICKILDHLFKNRSQLNKIDTSTSCAFILRLHEIIISKNKENEKMSFKNNKAKN
Ga0272434_100091674	F008668	N/A	MSFDSDTTDYEIIRERLKARKADDIVIRMKELLSFDRQQLKKTKLIIEAQVNKHRRDVIYEIDD
Ga0272434_100091677	F006206	GAG	LCKLDEILSEENYFEKSFLIDVFLNSQNRSFSLRSLIDSDSAAHTLIHANLVNRVCEKLEIQSISLAKEKLIRDYDEKISKKIITHKILFNLIIESHKKLTVSMLIADIDHHEVILSKF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272434_1000916

Overview

Ecosystem & Geography

Associated Families

Sequences