Scaffold Ga0272434

Basic Information
Taxon OID	3300031473 Open in IMG/M
Scaffold ID	Ga0272434_1000988 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031473 Open in IMG/M

Scaffold ID

Ga0272434_1000988 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	66263
Total Scaffold Genes	80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (17.50%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (27.27%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

66263

Total Scaffold Genes

80 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (17.50%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (27.27%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.5	Long. (^o)	159.59	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.5

Long. (^o)

159.59

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F002432	Metagenome	559	Y
F006206	Metagenome	378	Y
F009377	Metagenome	318	Y
F036994	Metagenome	168	Y
F037509	Metagenome	167	Y
F057011	Metagenome	136	Y
F066295	Metagenome	126	Y
F070712	Metagenome	122	Y
F091080	Metagenome	107	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100098823	F091080	N/A	MIILCXSRXVINKNIISFLCSXIMIDVYRACVINFQSEVSSYNXINFDFDSDIDXISKRSHNSDIKDLSMKVMSMTSVFIRAKDLNIFSKLLKMTLTVNNLKSNELSDMLMKQNMSISFSVTTLTKADRFSNSQRSHALKSSXNNHMLYVLTSCIXSRVFS
Ga0272434_100098824	F009377	N/A	MTRSTESESVSIACYDFQNVRRKSLLSQNXTASEEEDTNASSDTEEKNMNMLLFNHEMIKISISTELNAXISIHEADDIIVFIKYICQQHNIEIEIHNDIIQMLEDVNEINITLKAAQTRLQKKMKDKNVIIHHLKTALSQQSTLISEDCFLKSIKLLNSSLFEDSLQNVNNXLSRMXNKLKANKNHFSIKELKIVYFESQVSEAAIKHIASCMQNIFLNLFLEVEEVLLIIDKMYDDFNHYHTTQRQYLKLY
Ga0272434_100098843	F001253	GAG	VTFIKDVMKDVLISSTMSSSNDFFALKSLTTECVLFSNEINYSLKLLLDTEAADYSFIDKLIAQNVYDHLQIESLSLIKLKSIREFDDYYAKKLITHAIYSNLTV
Ga0272434_100098844	F002432	N/A	MTFFYFNKEFHSXMSFDSDTTDYKMTCEXLEARKTDDIVIXMKELLSFNHQQLKKMKLIIKVQINKHKRNITYKVNDXVXLSFKNIKTTRLCKDLKDKQLNLYQITAKVSIFYHLHLSVSMKHLHSMFSSKLLRSYSEDFLSEQHLESLRSITIEDDKH
Ga0272434_100098845	F002432	N/A	MQNNXAKXLSMIEFSKNFNIFSIISITSFYFNKSFHSRMSFNSDTTDYETTHERLEARKADDIIIQMKELLIFNHQQLKKTKQIIKAQINKHKXDVIYEVDDXVXLFFRNIKTTRSCKDLKDKQLEFYQITVKVEIFYHLCLSISMKQLHSMFSSKLLHSCFNDLLSEQHSESFKSLTIEDDEHXKINDILNFRCYRDXIQYKVKXTRLNXDDEXYYADKEEFKSSKEVLVEFHKLYSDKSH
Ga0272434_100098848	F057011	N/A	LCCQIKVLLKENYFEKSFLINASLISQSNSFSLHSLIDSDFIVYMLIHDKLVNKICQKLEIQFILLAKEKLIQNYDEKLVRKTITHKILLNLTIKSHKKLTMSMLIADIEHHEAILSKFXMNKNEILLNMKHDTIVFSDQLNTSISIFSILSNTKHSSXSRSTLTSSAAHSKIFKMLKHSVSFIQKESFSIQNINIIFFQALVKXKKKN
Ga0272434_100098849	F070712	GAG	MNDIKEKKFLVKIRKQVIFAEKXDSLNLYKKIKVTTFVDHSKLHDVILTNVKDINLQAEICFICHKSNHTSRECSDQLKVNTLEDDEFNQFTLNCKFNFDSKN
Ga0272434_100098851	F037509	N/A	MILISILIQINSTDNEMSIKKFMYLMINDIERQNNIKKLIKSMRTYNHVIAKESIAQSIASVQIN
Ga0272434_100098853	F006206	N/A	LCKLDEILSKENYFKKLFLIDAHFISQNXSFNLHSLIDSDSVVYMIIHSNLVDKVCKKLKIQSISLTKEKLIRDYDEKIFKKIITHKILLNRIIENHEKLTVSMLITDIDHHEVILSKLXMNKNEILLNMQNNVIVFSN
Ga0272434_100098855	F066295	N/A	LLFTDEKNSTXENXYGKIQNKLKINVNLFFNERVKLSYIHSRLFDDTAEIIQARHERDCVNLYKIIEDLLKKLAQLFDDLNKKVKFRRKYYNLIQEFKKFNEFYTQFQRLSFYLDYHEKQLIIDLKDKINLHLQFIXVDQLV
Ga0272434_100098875	F036994	AGCAG	MXDRMIIEADSLVDLLIEEINYRLVIEAGSLVARKREVDRFTDR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272434_1000988

Overview

Ecosystem & Geography

Associated Families

Sequences