NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1001001

Scaffold Ga0272434_1001001


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1001001 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)65535
Total Scaffold Genes80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F013598Metagenome269Y
F017941Metagenome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_10010012F000597N/AMINMSDNSFASESLTIKYVLSSNKISYSLKSLIDIKAADYSFIDKVIAQIVYNQLQIKSLTLIKAKTIQEFDDHYVKKLITHVIYLNLTVQDHIIDTAFMLIT
Ga0272434_10010017F017941N/AMKIADLKKNISESIYKQIHKINEINENCMLLREVIAKDET
Ga0272434_10010018F013598N/AMNFIINLFDSSEYNVILMIICKLLKERHYISCITNDEDITVKKTAEILI
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