Scaffold Ga0272434

Basic Information
Taxon OID	3300031473 Open in IMG/M
Scaffold ID	Ga0272434_1001015 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031473 Open in IMG/M

Scaffold ID

Ga0272434_1001015 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	64746
Total Scaffold Genes	58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (24.14%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

64746

Total Scaffold Genes

58 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (24.14%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (37.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.5	Long. (^o)	159.59	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.5

Long. (^o)

159.59

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004755	Metagenome	424	Y
F008115	Metagenome	338	Y
F008169	Metagenome	337	Y
F011463	Metagenome	290	Y
F036504	Metagenome	169	Y
F039410	Metagenome	163	Y
F048017	Metagenome	148	Y
F057011	Metagenome	136	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100101510	F011463	GAG	VHEIETCMSSSILLLNFDHQQLKKTKLIIKAQINKHKRNVIYKIDDQIXLSFRNIKIMRSCKNLKDKQLDLYSIIVKVETFYHLHLSTSMKHIHLMFSSKILRSYSNDSLSDQHIKSFRSITIEDEEHXKINDILNFRRYXDRMQYKVKXKDLNKDDDXYYVNKEEFNDFKKVLNEFHMLHSNKPR
Ga0272434_10010153	F048017	N/A	MFINHQTLKIFMKNKQLSQXQVNYLNILSKFNFQIIFRSDKMNTKINALIRMLLANVSESAQRLEDRFQTILIFDRVNVLSVESKANLYHXVCMINXTDEFCSEYRQAMNENKLKFNITKLKDCEIIDDVLFRKDLLXVSENMHTKLLQEVHDQSSTSHLDNKRIINLVQHFYY
Ga0272434_100101538	F036504	N/A	VIFRLEDDVDQQIYAKHHVDAFSFYQSLSELLKHLKEIYKDQNLIXKYHHEYIALKQLNKLFSSFYSEFIRIFSFLNYNDVTLMNNIQNKINNHLQNALSVCLIKFSSLDKLKIFLQDVNNKQQVNYQLRDKQXTVKLIAASKKRFVSSLTSASVLITSYVQLATFFTLESEXSRMSIICFNCKVLNHLSKNYSQLKTSTLTSRAFISRLNEIIMSKEEKKLFTEKLKNETKN
Ga0272434_100101547	F057011	N/A	LNLENQCFRRXXVXSIYIELXVRFXFKKLAISFRVIKKIEIISLCSQIKVLLKENYFKKSFLINASFISQSNSFSLRSLIDSDFIVYMLIHDKLVNKIYQKLEIQSISLAKEKLIXDYDEKLAKKTITHKILLNLMIESHKKLTMSMLIADIEHYEAILSKF
Ga0272434_10010155	F008169	GAG	LKFSSAKSFINKDNESFTETVIFSVSIKNXKTRCMILDRETDQLNELSNQRDVEIKELKTRLQIKEITSSDFIYFKRSRSQKISDSFXFTDEKNFTXKNXYNKIQNKLEINVDLFSNEXIKLSYVHFRLFNDAADVTQSKRERNCVNFYKIIDDLLKELAELFNDSDKKVNFHKEYYNLIQELKKFSEFYTQFQRLSFYLKYHEKQLIIDLKDKINSRLRFIXINQLVQSDSLKEIRFYLIHLNNDQXVIXKIKNKVNLIKCINDLSKIIFHRVVVTQSVDHSKSDHLKSCNAILTSVKKADVLVEICFICHKSDHSSRECLDQSTRINEVNDEYDXFDFDSNFDSKN
Ga0272434_100101551	F004755	GAG	LSYIHSRLFDDVAEITQTRCKHDCVNLYRIIDDLLKELVQLFNDLNKKVNFCRKYYNLIQEFKKFSEFYTQFQRLSFYLNYHEKQLIADVKDKIHSRLRFIXVDQLVQSDSLKEIHFYLICLNNDQRVIQEIKNKIKCINDFSKTIFHKATVVTQSVDHLKSDQLKSRDAILTSVKEVNILIRSCFIYHKLNHSFKECLDRFTKINAVNNEYDCFDFNSNFDSKN
Ga0272434_100101552	F039410	N/A	LHXVLYAIFLLMFIMNRAKTSILSLFEQFNSVLNEAAFMLXIENSNSFXTSYLSIIKILVXMIEENKDDRDQLECFELRRIEKIKIEVFNXFEKTMMLFCIFSNISFLFIQSLLNMTSXXSISAINIDTVNFLXLSMMRLNRILXVMIFLDIFSS
Ga0272434_100101555	F008115	N/A	LISLKRXKDIAINFITELSLSEDYNVICTIICHLIKEHHYVFCHXEDDDISVEKTIXIMLXNVYQLHNLLSSIVSNRDSQFISTMXKSFCKRLRITASLFTVYHLKINNQTKRVNQDVERELRIYCNYMQNDXVKXISMMKFSDNFNIFSIISMISFYFNKEFHSRMSFNSDTTDYKTTRERFKARKADDIIIXMKELLSFDRQQLKKTKLIIEVQINKHRRNIIYEVDDXVXLSFRNVKTTRLCKDLKDKQLESYQITVKAKIFYHLHLSVSMKHLHSMFSLKLLQSYLEDLLSEQHAESLRLIIIDDDDDEHXKIDDILNFRRYRGXIQYKVKXKDLDRDNEXYYVNKDEFNDFEKVLNEFHALYSRKSR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272434_1001015

Overview

Ecosystem & Geography

Associated Families

Sequences