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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031473 Open in IMG/M |
| Scaffold ID | Ga0272434_1001072 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 62824 |
| Total Scaffold Genes | 61 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (16.39%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.5 | Long. (o) | 159.59 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F033265 | Metagenome | 177 | Y |
| F035571 | Metagenome | 171 | Y |
| F038008 | Metagenome | 166 | Y |
| F075493 | Metagenome | 118 | Y |
| F083460 | Metagenome | 112 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272434_100107210 | F083460 | N/A | MQLRMKLSDSQAYSDALLELNASLIKYAAKRXLHKLLSHHLNHEKSQDNSENDDENEAAESV |
| Ga0272434_100107231 | F075493 | N/A | MRSVXAVHEYMLRRLMTSFAVASRTIHAXNVSRVQISIQIYVFDSDVHCESAFCFLKIITHLYHLIAQMQSLCXDCVDVCDAFSVLFLSLISLIFVILRYCDAIACXNYCEEESVSSASQLYLCIFLNENIQKYYFLDDE |
| Ga0272434_100107246 | F038008 | N/A | MNXNHLYIMILXSELSKIVIVANKKISIRQHNFDMFTLKQRVYLNDSDSRNNVTAIAMKMNXELNKRLRKSTLVITHHDELKKLVARVKHLADVVTANQECHEKIYKVYSDNQASLKTVKVMISTKDQTRLQ |
| Ga0272434_100107258 | F035571 | N/A | LTXLRSIILFCSMFRXTCSKLMYVSVSRVLMFTLLNTSATXRRVXFXSVSSLRSLLDSLSFLSRXCQTDASNAISDLTTAEYTCLAFVKITSYVKTSRXLSVSILVTXFAFICXRCTFHHSFIFSCIFRIHTFNFNLITEFSIYMLVIMLNFFDFLVKCVSLYFSDVNVASXVQAHFTRMSCALLNVLQISSMNLS |
| Ga0272434_10010726 | F033265 | GAG | MMTSQSKKXFKSCYETSIDCMIYLVLLFQTKTLNSYQLCERVFASDXESQLIYSQSIIXKSMIRQNKSIKMLNANLEFTAVTCRTTESNKYLXXNSATISISSQSSQXSFSTSIKIFTLEXNLIQIRLTMKSLMNDXKLEKQMILSFKXKSYXALIINNXKRXSXSLKHRSININETSFI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |