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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031473 Open in IMG/M |
| Scaffold ID | Ga0272434_1001213 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 57815 |
| Total Scaffold Genes | 63 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (12.70%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.5 | Long. (o) | 159.59 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F041516 | Metagenome | 159 | Y |
| F046102 | Metagenome | 151 | Y |
| F080688 | Metagenome | 114 | Y |
| F081945 | Metagenome | 113 | Y |
| F094622 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272434_100121318 | F081945 | N/A | MSSHLFTEEHSEEFRNHFSQISDADSLKSSSAASFLHEDDKLFAETIISLVFYEI |
| Ga0272434_100121330 | F094622 | N/A | MNLIINLNDNNNRDNVTAIAMRMNXELNKRLRESTLVITHHDELKELVARVKHLANVVIVNQECHEKIYKVYSDNQTSLKTVKVIISTKDQTHLQXVQATHESIXS |
| Ga0272434_100121338 | F041516 | N/A | MIQRVIHIHEAYNLSFRNYEIIHEKENLSDIEKMLHMLKENILVEDFNLHYFT |
| Ga0272434_100121348 | F046102 | N/A | MKDVLISSTTSSLNKLFASKSLTIECVLFSNEISYSLKSLIDIEAADYSFIDELIAQNVYNQLQIESLSLIKLKSIREFNDHYAKKLITHAIYLNLTVQDHMKRFVFMLITXLNQHQMILEKTXMNKIEVTIDMRDNHLQFSSFKAHIKASIKAHSTVLSSKKITIEQKSVIFT |
| Ga0272434_100121354 | F080688 | N/A | MTQAEMYXTTYSDDHRSSDFKDLHEKQTVESMISQLFEHSIKVQLSDHL |
| Ga0272434_100121358 | F000597 | N/A | MLNDSFTFESLITECVLSSNEINYSLKSLIDIEAADYLFINEVITQIVCDQLQIKLLTLIKAKLIQEFNNHYVKKLIIHIIYLNLTV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |