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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031473 Open in IMG/M |
| Scaffold ID | Ga0272434_1001296 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 55196 |
| Total Scaffold Genes | 57 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (28.07%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.5 | Long. (o) | 159.59 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002432 | Metagenome | 559 | Y |
| F004755 | Metagenome | 424 | Y |
| F028367 | Metagenome | 191 | Y |
| F036994 | Metagenome | 168 | Y |
| F083460 | Metagenome | 112 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272434_100129633 | F002432 | N/A | MQNDXVKXIFMMKFSDNFNIFLITSMTFFYFNKEFYSXMSFDSDMTDYKTTCERLEAKKADNIIIXMKELLSFDRQQLKKTKLIIEVQINKHKRNIIYEVDDXVXLSFRNVKTTRLCKDLKDKQLNFYQIIAKVSIFYYLRLSVSMKHLHSMFSSKLLQSYSENFLSEQHSESLRSIIIKDDEHXKINNILNFRCYQDXIQYKVKXTNLDRNNKXYYVDKEKFNDSEKVLNEFHKLYSNKSR |
| Ga0272434_100129637 | F028367 | GAG | MISLCKLDEILLKENYFEKLFLIDAHLIFQNXSFSLRSLIDSDSIIYMIIHSNLVDKVCEKLKIQSISLTKEKLIRDYDEKIFKKIITHKILLNLIIKSHKKLTVSMLIADINHHEVILSKLXMNKNEILLNMQNDVIVFSNQLITSISIFPISLNSKHSSXSRSTSSSSII |
| Ga0272434_10012964 | F036994 | AGCAG | MXDRMIIEADSLVDLLIEEINYRLVIEAGSLVACEREVDRFTDR |
| Ga0272434_100129642 | F083460 | GAG | MRLRMKSSDSQAYSDALLELNASSIEYAARRRLHELSSHHLNHEKSQSNSENDDENKAAEAV |
| Ga0272434_100129649 | F004755 | N/A | LKELAELFNDSDKKVNFCRKYYNFIQESKKFSEFYTQFQQLSFYLKYHEKQLIIDLKDKINSRLRFIXIDQLVQPDFLKEIRFYLIHLNNNQRVIREIKNKVNLIKCVDDLSKIIFHKAVVTQSVDHSKPDHLKSCDAILTNIKEADVLVEICFICHKSDHSFKECSDRPIRINAVNNKYNYFEFDFDLNFDSKN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |