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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031473 Open in IMG/M |
| Scaffold ID | Ga0272434_1001323 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 54452 |
| Total Scaffold Genes | 53 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (26.42%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (30.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.5 | Long. (o) | 159.59 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002432 | Metagenome | 559 | Y |
| F008115 | Metagenome | 338 | Y |
| F008735 | Metagenome | 328 | Y |
| F009580 | Metagenome | 315 | Y |
| F036994 | Metagenome | 168 | Y |
| F037509 | Metagenome | 167 | Y |
| F061401 | Metagenome | 131 | Y |
| F069514 | Metagenome | 123 | Y |
| F081945 | Metagenome | 113 | Y |
| F096307 | Metagenome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272434_100132318 | F069514 | N/A | MQNDXAKLLLMTEFIDNNALFLVIFSISFFLNKDFHSHMSFELNVIEYESFCKRLQTTKVENISEHMNKTLKFAHESLVKT |
| Ga0272434_100132321 | F096307 | AGAAG | MLYIIVIQIDASLKENMLKHKKDVDLKDVYDTKKCVCHRNLLIIHNTKKYVCLKDNKSXLENARKEKRCXIIFESNLSQI |
| Ga0272434_100132322 | F037509 | N/A | MILISLFIQVHSTDNKMNIKKFVYLMINDIERQNNIKKSIKSMKMYNHMIAREFIAQSVTSVQIN |
| Ga0272434_100132327 | F081945 | N/A | MFSCLFTEEHFKEFQNRFFQISDVNSLKSSSAASFIHEDDESFAEMIILFMFYEIXKT |
| Ga0272434_100132328 | F008735 | N/A | MKEIMIIVYVHALYQTLLSCIQSIFVSFILRYVEKLLEFKSDDDSNRVCKEMNDERRLIVQDLCDDLSYHCKKLRIQLYINXRTENDEQEQDDNIMLSNLILKLLHYAKDLDXIFNHTLSELFNNTLIVDQEIVRQLHLSERITRXDFNVXKCCRKCRSFIMSKTRLN |
| Ga0272434_100132330 | F009580 | AGCAG | MIEVRVRRLRLVDKMICIQISEHDLAQKLDFFRRQRDFFIYTDDITVVNVHDMQSEELFIXAFFSNFARMLQLAVVTQLSLVADFLDLRNDQSLILNDDNDET |
| Ga0272434_100132333 | F036994 | AGCAG | MXDRMIIEADSLVDLLIEEINYRLVIEADSLVAREREVDXFTDR |
| Ga0272434_100132337 | F008115 | N/A | MNFITELFLSEDYNIICTIICHFIKECHYVFCHXEDDDISVEEIIXIMLXNVYQLHDLLSSIVSNRDFQFISTMXKSLCKQLRITVSLFTVYYSKINDQMKXVNQDVERELRIYCNYMQNDXVKXISMMKFSNNFNIFLIISMISFYFNKDFHLRMSFNSDTTDYEITRERLKARKANDIVIXMKKLLSFDHQQLKKTKLIIKAQINKHKRDVIYEINDXVXLFFRHVKITRSCKDLKNKQLKLYQITVKVKVFYYLHLLISMKHLHLMFSSKLLQLYSEDSLSEQHAESLKFIIIDDDDDEH |
| Ga0272434_100132343 | F061401 | N/A | LNNDQQVIQEIKNKIKCVNDFSKTIFHKATVVTQSVDHLKFNQLKLHEAILTSVKKVNVLVEICFICHKSDHSSKECLNQPTRINAVNDEYDHFDFNLNFDSKN |
| Ga0272434_100132347 | F002432 | N/A | MKFSDNFNIFSITSMTFFYFNKEFHLXMSFNLDTTDYKTTCEQLKARKANDIVIQMKELLNLSHQQLKKMKLIIEVQINKHRRNVIYEVNNXVXLFFRNVKIMRSCKDLKDKQLELYQIIIKAKVFYHLHLSVSMKHLHSMFSSKLLQLYSEDSLSEQHAEFFKLIIINDDNDEHXEINDILNFRCYQDXIC |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |