Scaffold Ga0272434

Basic Information
Taxon OID	3300031473 Open in IMG/M
Scaffold ID	Ga0272434_1001344 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031473 Open in IMG/M

Scaffold ID

Ga0272434_1001344 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	54034
Total Scaffold Genes	60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (16.67%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (9.09%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

54034

Total Scaffold Genes

60 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (16.67%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (9.09%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.5	Long. (^o)	159.59	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.5

Long. (^o)

159.59

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F008169	Metagenome	337	Y
F009580	Metagenome	315	Y
F010214	Metagenome	306	Y
F011463	Metagenome	290	Y
F033265	Metagenome	177	Y
F037509	Metagenome	167	Y
F038009	Metagenome	166	Y
F044227	Metagenome	154	Y
F057011	Metagenome	136	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100134411	F044227	N/A	MMQLQLKSSNDETCIHALLELIAFAIKNVMKHQLLKLLNNHHYHEEFQSSCKNDNENEAFETI
Ga0272434_100134432	F011463	N/A	LKKTKLIIEAQINKHRRDVIYEVKNXVXLFFRNVKITRSCKDLKDKQLESYQITVKARVFYHFRLSVSMKHLHSMFNSKLLQLYSEDSLSEQHAEFFRLIIIDEDDDEHXKINDILNFRRYRDQIQYKIKXKDLDRNDEXYYVNKDEFNDFKKVLNEFHVLYSRKSR
Ga0272434_10013444	F002432	N/A	MQNDXAKXLSMIEFSENFNIFLIISMISFYFNKKFHSXMSFNSDTTDYEIICERLEARKADNIVIRMKKLLIFDRQQLKKTKQITEAQINKHKRDNIYEVDDXVXLFSRNMKTTRSCKDLKDKQLELYQIIANVKIFYRLRLFESMKXLHSMFSLKLLRFYSDDSLSEQHSKSFKSLTIEDDEHXKIDDILNSRHYXDXIQYKIKXTKLNXNNEXYYVDKEEFKSLKEVLVEFHKLYSDKSH
Ga0272434_100134440	F010214	GAG	MRVSVLFDYDASSLLCSSLTIFYTTMFXFDSRFEDERRFLCTRDARDCNIHRAVFFYSMIVIHXAEKYVMKERCTRXEDKVXLYXVILFFSXLDLCHVDVEXTVSINVRSQSFDVXLXSMKENAFXSFSXALDFSRR
Ga0272434_100134441	F057011	N/A	LKENYFEKLFLINASLISQSNSFSLCSLIDSDFIVYMLIHDKLVNKICQKLEIQFILLAKEKLIRDYDEKLARKTITHKILLNLTIKSHKKLTMSMLITDIEHHEAILSKLXMNKNKILLNMKHDTIVFSDQLNISISIFSISSNIKHSSXLQSTLISSAAHSKISKMLKHSVLIIQKKSFSIQNIKIDNEIHLYVMLTMNLLILCSE
Ga0272434_100134447	F038009	N/A	MIKASSFQLNYVKLYKRLIELICLKNNRSSRKRRILTLDFXXVFFLNDLKNTTKSFLFQTRDKIERSLFLVNKLSINXLLMSKXEVILLLISRRETELLLSSKXETELLLASELKTELLLSNEXKTRLLLASELSAELLLVSNL
Ga0272434_100134449	F009580	N/A	MIYIQISERNLAQRLNFSCRKXDFFIYTDDVIVVDIHDMQSEELLIXAFFNDFAXMLQFAIVVQLSLVTDFLNFRNDQSLILNDDNDKA
Ga0272434_10013445	F033265	N/A	MIYSVLLFXTETLNSYQLCERVFASDXESQLIYSQSIIXKSMIRLNKSIKTLNVNLESIAITCRMTKSNEYLXXNSVTISISSXSFQXLSSTLIKNFTLEXVSIQIQLTTKQLMNDLKLEKQMILSFEXKSYXTSIINNXKRRSXSSKFRSININETSFMK
Ga0272434_100134451	F037509	N/A	MILISILIQIHSTDNETSIKKFVYLMIDDIERQNNIKKSIESMKTYNHMIARESIAQLIASVQIN
Ga0272434_100134456	F002432	N/A	MQNDXAKXLSMIKFNENFNIFLIISMTSFYFNKNFHSRMNFDSDTTDYKTTYEYLEARKANDIIIXIKELLNFDHQQLKKMKQIIEAQVNKHKXNVIYEVNDXIXLFSRNIKITKSCKNLKNKQLKLYQITVKVEIFYHLHLLISMKQLHSMFSSNLLHSYFDDLLSE
Ga0272434_10013449	F008169	N/A	LKTRLQTKEITSSDFIYFERSRSQKISDSLXFTDEKNSTWKNXYDKIQNKLKINVDLFSNERVKLSYVHFRLFNDAADVAQSRCEHDCVNLYKIVNDLLKELAELFNDSDKKVNFHKEYYNLIQESKKFSEFYTQFQRLSFYLKYHEKQLIIDLKDEINSRLXFIXINQLVQSDFLKEIHFYLIHLNNDQRVIXEIKNKVNLIKCINDLSKIIFHKAVVTQSVDHLKSDHLKSCDAILTSVKEADVLVETCFIRHKSDHSSRECSD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272434_1001344

Overview

Ecosystem & Geography

Associated Families

Sequences