Scaffold Ga0272434

Basic Information
Taxon OID	3300031473 Open in IMG/M
Scaffold ID	Ga0272434_1001366 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031473 Open in IMG/M

Scaffold ID

Ga0272434_1001366 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	53382
Total Scaffold Genes	62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (19.35%)
Novel Protein Genes	12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (8.33%)
Associated Families	12

Scaffold Components

Scaffold Length (bps)

53382

Total Scaffold Genes

62 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (19.35%)

Novel Protein Genes

12 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (8.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.5	Long. (^o)	159.59	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.5

Long. (^o)

159.59

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004755	Metagenome	424	Y
F006206	Metagenome	378	Y
F008668	Metagenome	329	Y
F013598	Metagenome	269	Y
F017941	Metagenome	237	Y
F018839	Metagenome	232	Y
F044226	Metagenome	154	Y
F055317	Metagenome	138	Y
F065268	Metagenome	127	Y
F084912	Metagenome	111	N
F091080	Metagenome	107	Y
F098340	Metagenome	103	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100136612	F017941	N/A	MKIADLEKNIDESIYKQILKTNEINKNCMLLCEAIARDKT
Ga0272434_100136616	F013598	N/A	MNFIINFFDLYDYNAILTVICKLLKERYYISCIIDDEDIIVEKTAKMLIQ
Ga0272434_10013662	F055317	N/A	MTSKNTSGKDKAFVDFLQQTRSQAFSSIVDSQHASSFIAFDESNAETVIHDDIKVXKKRTYALNRETDRLVEVKQRDKSEIQQLKAQLQALTAITVNVVITAFSIVTYFERSKYHKILDPSMFTDEKNPTWKNXSLDIREKLAINVDTFPNELYKLSYIHFRLAGDVVEVTQVRRDLNCDNFYLTANELLEKLAQSFHDSDKKDNYRREYINLIQESKKFSDFFNQFQRLYIYLKYQKNVLVVDLKNKINSRLRIFXTAQVKSLTKLSDIRNYLIRLNNKHRAVXEIKDKLLKRDDSKIIISRATIAVQPSTSKPDXSKSRSAVLTSVKNADVLAETCFVCHKSGHSFRECSNRPIKVNAVDENYDRFKLDTESEFESKN
Ga0272434_100136628	F004755	GAG	LSYIHSRLFNNTAEITQARCKQNCVNFYKIINDLLKELAQLFNDSNKKVNFRREYYNLIQEFKKFNEFYTQFQRLSFYLNYHEKQLIIDLKDKINSHFQFIXINQLVQFNSLKEICFYLIYLNNDQRVIQEIKNKLKRVNDFSKTIFHKVTIVTQSVNHLKSDQSKLHDAILTNIKKANVLVEICFICHKSDHSFKECLNQSTRINAVNNKYDCFNFNSHFDLKN
Ga0272434_100136629	F006206	N/A	LCKLNEILSKENYFEKSFLIDAHFISQNQSFSLRSLINSNSVIYMIIHFNLVDKVCKKLRIQFISLTKEKLIKDYDEKISKKIITHKILLNLIIESHKELTVSMLIVDIDHHEVILSKLXMNKNEILLNMQNDIIVFSNLLRF
Ga0272434_100136631	F008668	N/A	MIFFYFNKEFHSXMSFDSDTTDYEITHEQLEARKADDIVIXMKKLLSFNHQQLKKTKLIIEVQINKHK
Ga0272434_100136634	F044226	N/A	MKFSDNFNTFSTILMTSFYFNKDFHSRMSFNSDTIDYKMTYQHIEARKIDDIVT
Ga0272434_100136639	F065268	N/A	MIKSTKSESVSIAHYNFXNVKRESLLSQNXTASEEENMNASSDTKEENMNTLLFDYEMIKISISTELNAXISTYKADDIVVFIKYIC
Ga0272434_100136642	F091080	N/A	MTDFNVXIFNDDINQLFAEFIKIXFLFNQKFSMIILCXSKQVINRNIISFLCSXIMINVYRAYVINFQSEISSYNQINFDFDSDIDXISKRSHSSDIKDSLMKVMSMTSIFIRMKNLNIFSKLLKMTSTVNDLKLNESSNMLMKQNMSILLSVTTLTKTDRFLNSQRSRALKSS
Ga0272434_100136644	F098340	N/A	MIKVAVYXTLVKNKKIKIFFLIISEINKALSSVEDFAKLNEIISVMSLNELKKKLLIVYHDFLNVFDREKTTQLSLHXSYDHKIKLKDES
Ga0272434_100136652	F084912	N/A	MTDQSKSCNTVLINVKENNLLIENCFLCHKSDHTFKECLNRSFRINALNDKFDHSLNFNSESDSKN
Ga0272434_100136656	F018839	N/A	MMIAKVVTFNHLTNDLYAAVFIIAMFIELKDKAKLIELNDFTILLNEDDFSLSQVTTEEINLFSI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272434_1001366

Overview

Ecosystem & Geography

Associated Families

Sequences