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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031473 Open in IMG/M |
| Scaffold ID | Ga0272434_1001389 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 52878 |
| Total Scaffold Genes | 64 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (20.31%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.5 | Long. (o) | 159.59 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002432 | Metagenome | 559 | Y |
| F025887 | Metagenome | 199 | Y |
| F039410 | Metagenome | 163 | Y |
| F044227 | Metagenome | 154 | Y |
| F055318 | Metagenome | 138 | Y |
| F057011 | Metagenome | 136 | Y |
| F070712 | Metagenome | 122 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272434_100138915 | F025887 | N/A | MSDDSFDFKSFTVDIILNSLEKIFKFLALINIEVIDMTFIDESLMSKLCERFDIQSISLSKSKLIQLYDKISDXKSITHALYILIMI |
| Ga0272434_10013893 | F002432 | N/A | MSFDSDMTDYKTTHERLEARKADDIVIXMKKLLSFDRQQLKKTKLIIKVQINKYKXNVIYEVDDXVXLSFRNVKTTRLCKDLKDKQLNFYQITVKVSIFYHLHLSVSMKHLHSMFSSKLLXLYSKDSLSKQHSESLRSVTIKDDEHXKINDILNFRCYRDQIQYKVKXKDLDRNNEXYYVNKEKFNDSEKVLNEFHKLYSSKPR |
| Ga0272434_100138947 | F057011 | N/A | LCSQIKVLLKENYFKKSFLINASFISQSNSFSLRFLIDSDFIIYMLIHDKLVNKVCQKLEIQSISLAKEKLIRDYNEKLARNTITHKILLKLTIKSHKKLTMSMLIADIEHHEAILSKSXMNKNEILLNMRHDTIIFSDQLNISILIFSILSNTKHSSXSRSTLISSAAHSKIFKMLKHSVSFFQKKSFLIQNIDVTSFQALVKRKKKN |
| Ga0272434_100138948 | F070712 | GAG | MNDIKEKKFLMKVRKQVIFAKKRDSLNLYRKIEVTTLINYSKSCNVILTSVKDIDLQAEICFICHKSNHTSRKCSDXSRVNALENDEFNQFTLNFEFNSDSKN |
| Ga0272434_100138952 | F044227 | AGG | MQLRMKSLDDEAYTHALLELIASAIKNVTRCXLLELLNNRRHHEESQSSSEDDDENEALEAI |
| Ga0272434_100138954 | F055318 | N/A | MLRDDEALCVDRVQSFRDYADFDNLNAHATKSNLHADEKVK |
| Ga0272434_100138958 | F039410 | N/A | MNKANTLVXFFFKRFNSVLNEATFMLXIENDSFXIVVETDRLSILEIFDXEVEVNEVDRDQLECFELEEIEKIEIEVSNXFGKTMTLICIFSNIFFLFIHDFSNMTSXXLMSAINIETVNFLXLSMMRFDRILXVIVFLNIFSSYSFINFSFVSDID |
| Ga0272434_10013897 | F025887 | N/A | MTESDILIFCFINMFDDSFNFKSFTVDIILNSLKKIFRSFALIDIEVIDIIFIDESLMSELCECFDI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |