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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031473 Open in IMG/M |
| Scaffold ID | Ga0272434_1001548 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 48807 |
| Total Scaffold Genes | 49 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (14.29%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.5 | Long. (o) | 159.59 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002432 | Metagenome | 559 | Y |
| F004755 | Metagenome | 424 | Y |
| F028368 | Metagenome | 191 | Y |
| F049323 | Metagenome | 146 | Y |
| F064252 | Metagenome | 128 | Y |
| F081945 | Metagenome | 113 | Y |
| F094620 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272434_100154828 | F094620 | N/A | MKFSDNFNTFSTILMTSFYFNKDFHSXMSFDSDTTDYKTTRQRIETRKIDDIVIXMSELLIFDHQQLKKIKQITEAQINKHRRDVIYEVDDQVXLVFENIKITRSCKDLKDKQLDFYSITVKVEIFYHLQLSRSMKHIHSVFSSKYLQSSSSNLLSKQHSESSRSMIIEENEKHXVLXTCLNRSEFRSNSNQFD |
| Ga0272434_100154829 | F049323 | N/A | MMKEVNEESAEQTRRSAENDSKKCARFKLDIASXLVLIKLIRVRSELXLIQTCS |
| Ga0272434_100154831 | F064252 | N/A | MIINTLEEINKHYXKKMLNLKNKLKEVSYSVNQSXFHQFTESQVSIKSLSHQSIENHTXRKSFTLFNNDHHKSFKFSNSSIFINKDESTXDSXRIKINDKLQTNVDHFVDETICIVYIISRLRDDAAEHIFAXHYHDALHSYILIYELLKYLEEIYKNQNKNXKCCHEYNTLRQADKLFNVFYFDFMKLFSYLDYDDCTLMNDLQNKINNRLQNALSVCFEDFASLHHFKIFLQDVNNKQRVNYQLRSQLRTVIVKVTVVPDKCVATSLSVMTSIINYVKFTLSSIFESARSFIICYICKTLNHLFKNCFQNKINTSASCAFILHLHEIIISKNKKNEKMSSFKDNEAKN |
| Ga0272434_10015485 | F081945 | N/A | MSSHSFTEECFEEFQNHFSQTSDADSLKSSSAASFLHKDDESFVEMIISLMFYEI |
| Ga0272434_10015486 | F004755 | GAG | LSYIHSRLFDDTAEITQARCERDYVNLYKIIKDLLKKLAQLFDDLNKKVNFHKEYYNLIQESKKFSKFYTQFQRLFFYLDYHEKQLIIDLKDKIHFRLRFIXVNQLVQSDSLKEIHFYLIHLNNDQRVIQEIKNKIKRINNVSKTIFYKATIVTQQSFNHLKSDHLKSRDAILTSVKEADILVESCFICHKSDHNFKECLDQSTRINAVNKEYNCFDFNFNFDFNSKN |
| Ga0272434_10015487 | F028368 | N/A | MIIHFNLVNKVCKKLKIQPISLTKEKLIRDYDEKIFKKIITHKILLNLIIESHKKLTVSMLIADIDHHEVILSKFXMNKNEILLNMQNDVIVFSNQLNTSISIFSISLNSKHSSXSRSTSLFSITQTKISIMLKXLVSITAQKESFLIQSINVTSFKTLLNHSKKNKIKVFALFMMNINRNTQCNLNALNVSSINKMTQNLKDIKAKLSLKYHEFLNVFDXTQLNKLLFHCFYDHKIELISDSTSSHYXVY |
| Ga0272434_10015489 | F002432 | N/A | MKFSDNFNIFLITSMILFYFNKEFHSXMSFNSDTIDYKTTCEXLEARKTNDIIIXMKKLLSFNHQQLKKMKLIIKVQINKHRQDITYEVNDXVXLSFRNIKTTRLCKDLKDKQLNLYQITAKVSIFYHLCLSVSMKYLHSMFSSKLLXSYSEDSLSEQHSESLRLITIENNEHXKIDDILNFRCYQDXIQYKVKXKNLDRNDKXYYVDKEKFNDSEKVLNEFYKLYSSKSR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |