Scaffold Ga0272434

Basic Information
Taxon OID	3300031473 Open in IMG/M
Scaffold ID	Ga0272434_1001678 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031473 Open in IMG/M

Scaffold ID

Ga0272434_1001678 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	46196
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (18.37%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (20.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

46196

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (18.37%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (20.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.5	Long. (^o)	159.59	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.5

Long. (^o)

159.59

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F002432	Metagenome	559	Y
F008115	Metagenome	338	Y
F026450	Metagenome	197	Y
F032884	Metagenome	178	Y
F057011	Metagenome	136	Y
F076668	Metagenome	117	Y
F086375	Metagenome	110	Y
F096307	Metagenome	104	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_10016781	F026450	N/A	MTLSSIIKHRSSLDLFLLKHLFNSISSFFLIMSRLFKEHFEALFFIVKDNNSFAEIITSSMTMKALKKRCEKLKARLQAREITLSSSIYSERSKFQKIFDSLLFTDEKNSIXENXYEKVQNKLKINVDLFSSEXVKLSYVHFRLFNDATEITQSRCERDCFNSYKIVDELLKELAQLFNDSDKEVNFRRNYYNLIQEQKKFSEF
Ga0272434_100167817	F086375	N/A	MFTLFVNSKSITSXNRDENXFNKIKKHYKXQNNDHVVIFKXLHKLRQFNVXKEVNEIDKAAMKDNLRDEIEQERKNKDIHDNASQ
Ga0272434_100167818	F076668	N/A	MTCLLLTSSFLACASARKTSKNLMHLTDHYAIKETSVFKFTTTTKKIMHMSNALSTDILMLCNRKDATNQTLLRCAKFENIRRLQKISFSKXSSKDXLKRLCMIMLEQTCYNMIFAFSALSXVLFKKLLKTLXFSLXKVSALLFHIITLVVEFSLTFCSMQTLTXQQFMSNASSFKIKIXDLXRISXXILMSCFSRQTRKCLSSSIR
Ga0272434_100167821	F008115	N/A	MLXNVYXLHDLSSSIVSNRDSQFVSIMXQSLCKXLKITTSLLTIYHSEIKDQLKXANQDVERELRIYCNYMQNDXAKXLSMMKFSENFNIFSIISMISFYFNKEFHSRMSFDSDTTDYKITCERLEARKVDDIIIXIKELLIFDRQQLKKMKQIIEAQINKHRRDVIYEVDDXVXLFSKNIKTTRSCKNLKDKQLESYQITVKVEIVYHIHLLISMKQLHSMFSSKLLRSYLDDFLSEQHSESSRSLTIEDDEHXEINDILNSRRYRDXIQYKVKXTRLDXNHEXYYVNKEEFKNSKEVLVEFHKLYSDKSH
Ga0272434_100167824	F057011	N/A	LCSQIEVLLKENYFEKSFLINASFISQSNSFSLRSLIDSDFVVYTLIHDKLVNKVCQKLEIQSILLAKEKLIQDYDEKLARKTITHKILLNLTIKSHKKLTMSMLIADIEHHEAILSKLXMNKNEILLNMKHDTIVFSDQLNTSISIFSILSNIKHSSXSRSTSISSTAHSKIFKMLKRSVSFFQKESFSI
Ga0272434_100167830	F000597	N/A	MSMLNDFFTSESLTTKCVLSSNKINYSLKSLIDIKAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIQEFDDHYVKKLIIHAIYSNLTVQDHTIDMTFMLITRLNQHQMILEKTXMNKSNLVIDMQIDFLXFSNFTSN
Ga0272434_100167834	F032884	GAG	MTIRNERIKREECEETKKNESMMTKVEKECLYVQTIDVIDQREDIKQRL
Ga0272434_100167835	F002432	N/A	MQNDXVKXISMIEFSDNVNTFSIISMISFYFNKEFHSXISFDSDTIDYKITHEXIEVRKADDIVIQMKELLNFNHQQLKKTKLIIKAQINKHKXNVIYKIDDQIXLSFRNVKITRSCKNLKDKQLDFYLIIVKVKTFYHFYLSTSMKHMHSMFSSKLLXSYSEDFLSEQHSESLRLITIKDDKHXEIDDILNFRRYQGQIQYKVKXKDLDRNDEXYYVDKEKFDDSEKVLNEFHKLYSSKSR
Ga0272434_100167837	F096307	AGAAG	MLYIVVTQINVSLKEDVLKHKKDVDLKNVCDIKKCVYHRNLLITCNIKKCVYLEDNKCXLEDVKEEKRCXVIFESNLSQI
Ga0272434_100167847	F032884	N/A	MTIRNERVEREECKETKKNESMRARVERERLYVQTIDVIDQXEDIKQRLXSDYM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272434_1001678

Overview

Ecosystem & Geography

Associated Families

Sequences