NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1001971

Scaffold Ga0272434_1001971


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1001971 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40976
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (16.28%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004755Metagenome424Y
F028368Metagenome191Y
F032102Metagenome180Y
F036994Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100197112F032102N/AMKIADLKKNISESIYKQILEINEIDENCTLLREAIARDETQYEDIKLKNCXIQNEILYYDSQL
Ga0272434_100197116F004755GAGLSYIHSRLFDDIAEIIQAKHERDCVNLYRIIEDLLKKLAQLFNDLNKKVNFHRKYYNLIQEFKKFNEFYTQFQRLFFYLDYHEKQLIVDLKDKINFRLXFIXINQLVQSDFLKEIHFYLIYLNNDQRVIQEIKNKLKRVNNFSKTIFHKVTVITQSVDHSKSDQSKLHDAILTNVKKADVLVKICFICHKLDHSFKKCLNRSTRINAVNKEYDHFDFNSNFN
Ga0272434_100197133F028368N/AMLIHANLVNRVCKKLEIQSISLIKEKLIRDYDEKIFKKIIIHKILLNLIIESHKKLTVLMLIADINHHKVILSKLXMNKNEILLNMQNNVIFFSNQLNTFISIFSIFLNSKHSSXSXSTSLSSIIQTKIFIMLKXSVSTTTKKELFSIQSINAASFKTLLNQSKKNQTEVFVLFMTDIDREITYNTQCNLNVLNVSSINEMTQNLKDIKVKLS
Ga0272434_10019715F036994AGCAGMXDRMIIEADSLVDLLIKEIDYQLVIEADSLVACEREIDRFTDR
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