NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1002027

Scaffold Ga0272434_1002027


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1002027 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40084
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (40.48%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021452Metagenome218Y
F065269Metagenome127Y
F098340Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_10020273F098340N/AVYQSLVKNKKIEIFFLIISEINKALSSVKDFAKLNEMISVMSLNELKKKLSIVYYDFLNVFDREKTTQLSLH
Ga0272434_10020274F021452N/AMSDDSFNFKSFIVDVILSNLEKIFRSFALINIKVINMTFINKSLMSKLCECFDIQSISLSKSKSIQSYDEISERKSITYTLYTSIMIQEHKNEMMFLLIIRLDQHKIIIENF
Ga0272434_10020275F065269N/AMTKSSESASIACYELQNVRRKSLLSQNQTASKEEDTNVSLNTKEENMNALLFDHEMIKISISTELNA
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