NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1002040

Scaffold Ga0272434_1002040


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1002040 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39867
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (13.16%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061399Metagenome131Y
F083460Metagenome112Y
F086376Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_10020402F083460GAGMQLQMKSSDSQAYSDALLELNTSLIKYAARHQLHKLLNHHFNHEEFQDNSENDDENEAAEAV
Ga0272434_100204038F086376N/AMTRSTESESVSITHYDFQNVKRESLLSQNQAASEEKKGMNTMSNTEEENINVLLFVYKMIKISINKELNAXITINKTDDIIIFIKYMLHQHNIEIKIHNNMIQMLKNINEINITLKIMQTCLQKKNRDKNVIIHYLKAASSXQSTSISED
Ga0272434_10020409F061399N/AMNYVNSLSLNIFINITYKYVLVFINHFIKIRHLVLITFMKVEEVINCFYAHVXKHHDLLEFFVSDQDTQFIFNVXKHMCKMLKINAKLLMMYHFKIDDQIKRINAVMKHYLQIFVNYMQNDXVKXLSEVEFIINNASSLITLASLFLINLSQNSCLDFKSSESLLENLTFQAXNELINVEEFIKKMKKLTEHLRDEMLIAQIIYEFNVNFFHCSCSKYFIEDEVXLNVHNFSIAHLTIKLNNHNVDLFKIKCVFKNNSLIIKLNLSVFMKIHSIFYVILLNHITSDFLLSQHQKSQELVIIKNDERFXYVNSILNFKRDKCYNSSLLKYYIN
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