NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272434_1002068

Scaffold Ga0272434_1002068


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1002068 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39515
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018839Metagenome232Y
F037509Metagenome167Y
F046102Metagenome151Y
F070712Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100206818F018839N/AMMIAKVVTFNHLTSDLYAAVFIIAMFIELKDETKLIELNDFTILLNEDDFSLSXVTTEKINLFNI
Ga0272434_100206819F046102GAGVTFIKYVMKDVLISSTISSSDDFFASKSLTIEYVLFNNEISYSLKSLIDTEATDYSFIDESIAQNVYDHLQMKFLSLIKLKSIRKFDDHYAKKLIIHAIYSNLTVQDHMKRFVFMLITXLDQNQMILEKTXMNKIEMTIDIKDDCFQFSSFKTHIKAFIKAHSTVLLSKKIMIEQKSLIF
Ga0272434_100206828F037509N/AMILISLFIQIHSTDNKMSIKKFVYLMINDIERQNNIKRSIKSIKTYNCMIIKEFIAQSVASVQID
Ga0272434_100206830F070712GAGMNDIKEKKFLIKVRKQVIFAEKXDSLNLYRKIKVTTFVNHLKLHDAILTSVKNINLQAEICFICHKSDHTSREYSD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.