NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1002306

Scaffold Ga0272434_1002306


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1002306 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36345
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (17.39%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F008668Metagenome329Y
F028978Metagenome189Y
F037509Metagenome167Y
F096307Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100230611F008668N/AMKFNNNFNIFLITSMILFYFNKEFHSXMSFDSNMIDYKTTYEQLEVRKANDIVIQMKKLLNFNHQQLKKMKLTIEIQINKHK
Ga0272434_100230625F096307AGAAGMLYIVVTQVDVSLKEDVLKHKKDVDLKDVCNTKKCVCHRNLLITRNTKKCVCLEDNRSXLEDARKEKRCXVISESSLSQI
Ga0272434_100230626F002432N/AMKFSENFNIFLIISITSFYFNKEFHSXMSFNSDTTDYETTCEDLEARKVDDIIIQMKELLIFDHQQLKKTKQIIEAQINKHRXDIIYEVNDXVXLFSRNIKTTRSCKNLKDKQLEFYQITVKVEIFYHLHLLISMKQLHSMFSSKLLRSCLDNLLSEQHSESSRSLTIEDDEHXKIDDILNSKRYRDRI
Ga0272434_100230633F037509N/AMILISILIQIHSTDNETSIKKFVYLMIDDIKRQNNIKKLIESMRTYNRMIVRESIAQSVASVQID
Ga0272434_100230644F028978N/AMHALXLVSKHDLNKENDESIYQLILEVNRINKNYILLHEVVLKDEAQYEDTKLRNCXVQNEILYSSDLL
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