NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1002479

Scaffold Ga0272434_1002479


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1002479 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34413
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (9.38%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F021216Metagenome219Y
F059497Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100247913F059497N/AMSIEDIDRKIIYNTQCELDVINVFSVNETTQNLEDIKVKLSLKYQNFLDVFDXAQANKLSSHRSYDHKIELTSDITSFCC
Ga0272434_100247928F021216N/AMSQMKSRMKSNAMRRKHHRLEKAFRNYERSDDDHSNDTLNEHTESISSCNVIKELNEREK
Ga0272434_100247930F002432N/AMQNDXAKXISMIEFNNNVNTFLIILMISFYFNKEFHSRMSFNSDTTDYKITREXIEARKANNIVIXMKELLNFDRQQLKKTKLIIEAQINKHKXDVIYEIDDQIXLSFRNVKIMRSCKNLKDKQLDFYSIIVKVETFYHLRLSTSMKHIHSMFSSKLLQSYSENSLSEQYSESLRLITIKNDEHXKIDDILNFRCYQDQIQYKVKXKDLDKDNKXYYVDKEKFDDLEKVLNEFYKLYSSKSR
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