NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1002520

Scaffold Ga0272434_1002520


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1002520 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34005
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (24.39%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F005901Metagenome386Y
F013598Metagenome269Y
F028667Metagenome190Y
F037509Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100252017F037509N/AMILILLFIQVHLINNEINIKKFVYLMIDDIERQNNIKKSIKSMRTYNYVIAREFIAQSVASVQIN
Ga0272434_10025204F028667GAGMTLKLNKQXIDLQVNHIKRLNELKINQMTINTQEKTIIELREKVLSLKKKQRSVNQLQSRQSIKSRVSMKSLSRQSIENHTQRKSFILFNNDHHKSFKFLNSSVFIDEDELTXNSXRIKIDDKLQKNVDHFVDEIICIVYVISRLEDDAAEHIFTXHHHDALHSYISIYKLLKHLEEIYENQNKNRKCRCKYNALRQADKFFNVFYFNFMKLFSYLEYDDHTLMNDLQNKINNRLQNALLICSKDFTTLYCLKSFLQNVNNKQRVNYQLRSERCMIIIKVIITFEKHATFLLAVTTSIIEYIKSTIFSTSESVRSFIICYICKTSDHLFKNCSQNKINTSASHVFILRLHEIIISKNKENEKITFFFENNEAKN
Ga0272434_100252040F005901N/AMISLLQTNVDHFVNETICIVYVIFRLEDDAAEHIFAXHHHNASHIYISIYKLLEHLEEIYNELNKNRKCRCKYNVLRQADKSFNVFYFNFMKLFSYFNYDDCTLINDLQNKINNCLQNTLSVCSKNFASLTRLRIFLQDVNNKQRVNYQLRSERCTVIVKVTVVSDKHAATSLSVTTSVINYVKFIISFTSESVKSLIIYYICKIFDHLFKNCSQLNKINTFASCAFILRLHEIIISKNKKNEKMSFKNNEAKN
Ga0272434_10025205F000597N/AMKDVLISLMISMSDNSFASESLITECVLFSNEISYSLKSLIDIEAADYSFIDEVITQIVCDQLQIESLTLIKAKSIQEFNDHYAKKLITHVIYSNLTVQDHMIDTASMLITRLN
Ga0272434_10025209F013598N/AMNFIINLFDSFNYNVILTVICRLLKEKHYISCIIDDEEITVERTAKMLIQ
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