NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1002732

Scaffold Ga0272434_1002732


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1002732 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31520
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (10.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F005901Metagenome386Y
F064254Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100273217F000597N/AMSSSDNFFASKSLTIECVLSNNEISYSLKSLTDIEAADYSFIDELIAQNVCDQLQIKSLTLIKAKSIQEFDDHYAKKLITHVIYSNLTVQDHMIDTASMLITXLNQH
Ga0272434_100273229F064254N/AMQEFYKFISLLFSLSFIXLFNDVTAXNXFNMLIESIIXMIIVAALMIFKSFLKFVMFFSHCIAFHSTFHLKHVNKMCLIDIXFLLHLHVIIATSSTHLSYKNXLKSIFLVHSCINNALXDFAXLLCSCRCRCVIFDIKYXKXAALNFSFQTILHVCLICFCMSVNLIIISVHXCLISDRNNSYASLIILSAASFSSTSACFVT
Ga0272434_10027327F005901N/ALNSSVFINEDESTXDSXRIKINDKLQTNVDHFVNEIICIVYVISRLEDDVAEHIFAXHHHDALHSYISIYELLEHLEEIYENQNKNRKCCCKYNTLRQADKFFNVFYFNFMKLFSYLEYNDYTLMNDLQNKINNRLQNALLICSKDFITLHCLKNFLQSMNNRQXVNYQLQSERCMIIIKVIIASEKRVTFLSAVTTLIIEYIKSTIFSTSESVRSFIVCYICKILDHLFKNCFQNKINTSAFYLFIFHLHEIIISKNKKNEKMSFENNEAKN
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