NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1002782

Scaffold Ga0272434_1002782


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1002782 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30962
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008735Metagenome328Y
F094622Metagenome105Y
F100079Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100278213F008735N/AMKEITIIIHVHALYQTVLSCIQSIFVLLILRYVKKLLESKSNEDSNRICKEVNDKKRLIVQDLYNDLNYHHKKLRIQLYINXRTENDEXRXNDNIMLSNLILKLLHYAKDFNXIFNHTLSKLFNSTLIINXKIVKXLHLSERITKQDFNVXKRCRKCKSFIMSKTELN
Ga0272434_100278227F100079N/AMFKYRHFIHNXYADEKTLLKEERHKRVNKEXLNYVIXLKV
Ga0272434_10027826F094622N/AMFTLKQRVYLNNDDSRDDVTAIAMRMNXKLDKRLRKLTLVITHHDELKELVARAKYLADVATANQEYHEKIYKVYNDSQTSLKTVKVMISTKDQTCLQQVQIAHESIQS
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