NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1002858

Scaffold Ga0272434_1002858


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1002858 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30195
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Lecanoromycetidae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033265Metagenome177Y
F070712Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100285810F070712GAGMNDIKEKKFLIKVRKQVIFAEKXDSLNLYRKIEVTTLVDHSKSYDAILTSVKNINLQAEICFICHKSDYTSKECSDQSRVNALKDDKFD
Ga0272434_100285818F033265N/AMIYSVLLFQTETLNSYQLCEKVFASIXESQLVYSQSIILRSMINXNKSIKTLNVNLESTAITCRTTESNKYLXXNSATISIFSQSLQXFSSTSIKNFTLEXILIQIQLIMKQLMNDLKLEKQMILSFEXKSYXVLIINNCKRRSXSSKFRSINIDETSHIR
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