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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031473 Open in IMG/M |
| Scaffold ID | Ga0272434_1002893 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29818 |
| Total Scaffold Genes | 30 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (16.67%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.5 | Long. (o) | 159.59 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002432 | Metagenome | 559 | Y |
| F024448 | Metagenome | 205 | Y |
| F037509 | Metagenome | 167 | Y |
| F064252 | Metagenome | 128 | Y |
| F086376 | Metagenome | 110 | Y |
| F087979 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272434_100289310 | F002432 | N/A | VHACNIYCNYMQNDXIKXISMMKFSDNFNIFLITSMIFFYFNKEFHSRMSFNLDTTDYKTTHERLEARKADDIVIXMKELLSFNHQQLKKTKLIIKVQINKHRXNITYEVNDXIXLSFKNVKTTRLCKDLKDKQLNLYQITVKVSIFYHLHLSLSMKHLHSMFSLKLLQSYSEDFLSEQHSESLRLITIKDDEY |
| Ga0272434_100289317 | F037509 | N/A | MILISLFIQVHSTDNKMNIKKFMYLIINDIERQNNIKKSIKSMRIYDHMIAKEFIAQSVASVQID |
| Ga0272434_100289322 | F064252 | N/A | MNQLQSQQSTKSXASIKNYTXRESFTLFNNDHHKFFKFLNSFIFIDEDESTXNSXRIKIDDKLQTNVNHFNNENICIVYVISRLEDDIAEHIFAQCXHDALHSYILINELFEHLKEIYDELNRNRKCCRKYNALRQADKSFNVFYFNFMKLFNYLDYDDCILMNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQNVNNKQRVNYQLRSERCTVIIKVMIISDKRAATSLSVITLIINYVKFIISSISESARSSIICYTCKTSNHLSKNCFQNKINTSAS |
| Ga0272434_100289323 | F024448 | N/A | MSMSDDFFASEFLTTECVLSSNEINYSLKSLIDIEAADYSFIDEVIVQIVCNQLQIKSLTLIKAKSIXKFDNHYAKKLITHVIYLNLTVQDHMIDTAFMLITQLNQHQMIFKKTXMNKINLVIDMQIDFLXFSNFISSQKSIVLFSNNKTITK |
| Ga0272434_100289329 | F087979 | N/A | MKKKNENSTFIHMNQAESRLNNSFIDLRLQKFMHITEIIETELLRLN |
| Ga0272434_10028939 | F086376 | N/A | MTRSSESASIARYELXNARRELLLSQNQTASEEEDMNMSLNTEEKNTNALFFDHEMIKISINTELNAXISIHEADNIVVFIKYMCQQHNIEIEIYNDMIQMLEDVNEINIMLKITQTRLQKENKDKNVIIHHLKAALSQQSTLISED |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |