NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1002925

Scaffold Ga0272434_1002925


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1002925 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29496
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (10.53%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024448Metagenome205Y
F094626Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100292524F094626N/AMFLNEXNIITARFFKKLNDKMLDSFKITDSVDFFYKLKLSETMHIHDVFHSKLLHSVVDDSLSDQKNELLKLIIINDEDEXKIDNILNFX
Ga0272434_100292530F024448N/AMKDVLISSTMSMSDDSFASKSLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVYDQLQIKFLTLIKAKSIQEFNNHYAKKFIIHVIYSNLTVQDHMIDTASMLITQLNQHQMILEKIXMNKINLIIDMQINSLQFSNFISS
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