NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1003126

Scaffold Ga0272434_1003126


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1003126 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27717
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (17.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F032884Metagenome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_10031261F002432N/AIDDQTKRVNQDVERELRIYCNYMQNDXVKXISMMKFSDNFNIFSIISMISFYFNKDFHSRMSFNSDMIDYEITCERLKARKADDIVIXMKELLSFDHQQLKKTKLIIEAHINKHKRDVIYKINDXVXLFFRNVKITRSCKDLKDKQLELYQITVKAKVFYHLCLSISMKHLHSMFSSKLLQSYSEDLLLEQHAEFFRLIIIDDDDDEHXEINDILNFRRYQDRIQYKIKXKDLDRDNEXYYVNKDEFNDFKKVLNEFHTLYSRKSR
Ga0272434_100312615F032884GAGMTIRNERVEREECEETKENGSTMTRVEXERLYAQTIDVIDQREDIKQRL
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